JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC18_chr1_93175724_93283730	0/0	c0013	4368	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0014	4368	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0015	4368	1	0	0	1	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/1	c0016	4368	1	0	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0017	4368	1	0	0	1	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0018	4368	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0019	4368	1	0	0	0	0	1	copy fasta	CCDC18	chr1	93175724	93283730
CCDC190_chr1_162846020_162866175	1/0	c0001	906	425	91	68	213	10	42	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/1	c0002	906	23	4	9	1	5	3	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	c0003	906	3	0	0	2	1	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	c0004	906	3	0	0	0	0	3	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	c0005	906	2	0	0	2	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	c0006	906	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	c0007	906	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	c0008	906	1	0	1	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	c0009	906	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	c0010	906	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	c0011	906	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC191_chr3_113959137_114061526	1/1	c0001	2811	264	51	42	131	11	27	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0002	2811	51	7	14	26	1	3	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0003	2811	19	3	2	12	0	2	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0004	2811	10	10	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0005	2811	4	4	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0006	2811	4	0	0	4	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0007	2811	3	0	1	0	2	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0008	2811	2	1	1	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0009	2811	2	2	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0010	2811	2	0	2	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0011	2811	2	1	1	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0012	2811	2	2	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0013	2811	2	0	0	2	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0014	2811	1	0	0	0	0	1	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0015	2811	1	0	1	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0016	2811	1	0	1	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0017	2811	1	0	0	0	0	1	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0018	2811	1	0	0	1	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0019	2811	1	0	0	1	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0020	2811	1	1	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0021	2811	1	0	0	1	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0022	2811	1	0	1	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0023	2811	1	0	0	1	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0024	2811	1	0	0	1	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0025	2811	1	1	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	c0026	2811	1	1	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC192_chr5_127698391_127946507	1/1	c0001	822	211	51	46	78	8	26	copy fasta	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	c0002	822	14	13	1	0	0	0	copy fasta	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	c0003	822	3	3	0	0	0	0	copy fasta	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	c0004	822	2	1	1	0	0	0	copy fasta	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	c0005	822	2	2	0	0	0	0	copy fasta	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	c0006	822	1	0	0	1	0	0	copy fasta	CCDC192	chr5	127698391	127946507