JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC192_chr5_127698391_127946507	0/0	c0007	822	1	0	0	1	0	0	copy fasta	CCDC192	chr5	127698391	127946507
CCDC194_chr19_17382196_17399196	0/1	c0001	705	213	37	57	74	10	34	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	1/0	c0002	705	196	55	18	104	4	14	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	c0003	705	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	c0004	705	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	c0005	705	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	c0006	705	1	0	1	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	c0007	705	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC195_chr2_224698764_224721365	1/1	c0001	606	407	86	72	191	16	40	copy fasta	CCDC195	chr2	224698764	224721365
CCDC195_chr2_224698764_224721365	0/0	c0002	606	3	0	0	3	0	0	copy fasta	CCDC195	chr2	224698764	224721365
CCDC195_chr2_224698764_224721365	0/0	c0003	606	1	1	0	0	0	0	copy fasta	CCDC195	chr2	224698764	224721365
CCDC195_chr2_224698764_224721365	0/0	c0004	606	1	1	0	0	0	0	copy fasta	CCDC195	chr2	224698764	224721365
CCDC196_chr14_66481371_66503553	1/1	c0001	894	361	88	69	154	10	38	copy fasta	CCDC196	chr14	66481371	66503553
CCDC196_chr14_66481371_66503553	0/0	c0002	894	2	0	2	0	0	0	copy fasta	CCDC196	chr14	66481371	66503553
CCDC196_chr14_66481371_66503553	0/0	c0003	894	1	0	1	0	0	0	copy fasta	CCDC196	chr14	66481371	66503553
CCDC197_chr14_93992301_94013863	0/1	c0001	819	219	50	63	56	13	36	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0002	819	132	23	8	88	3	10	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0003	819	8	0	1	5	1	1	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0004	819	8	5	2	0	1	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0005	819	7	7	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0006	819	4	4	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0007	819	3	3	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0008	819	2	2	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0009	819	2	1	1	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0010	819	2	2	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0011	819	1	0	0	1	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0012	819	1	0	0	1	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0013	819	1	0	1	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0014	819	1	0	0	0	0	1	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0015	819	1	0	0	1	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	c0016	819	1	1	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC198_chr14_57464300_57498857	0/1	c0001	891	247	21	52	132	11	30	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	c0002	891	68	35	14	8	3	8	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	1/0	c0003	891	38	34	3	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	c0004	891	3	2	1	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	c0005	891	3	0	3	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	c0006	891	2	1	1	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	c0007	891	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC200_chr17_43216420_43233623	0/0	c0001	507	201	59	46	70	7	19	copy fasta	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/1	c0002	507	125	21	25	50	3	25	copy fasta	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	c0003	507	2	2	0	0	0	0	copy fasta	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	1/0	c0004	507	2	1	0	0	0	0	copy fasta	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	c0005	507	2	0	2	0	0	0	copy fasta	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	c0006	507	1	1	0	0	0	0	copy fasta	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	c0007	507	1	0	1	0	0	0	copy fasta	CCDC200	chr17	43216420	43233623
CCDC201_chr7_45854994_45878082	1/1	c0001	564	246	70	41	94	10	29	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0002	564	77	9	20	38	4	6	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0003	564	52	1	6	42	0	3	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0004	564	41	3	8	23	2	5	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0005	564	10	10	0	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082