JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC201_chr7_45854994_45878082	0/0	c0006	567	10	0	7	0	2	1	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0007	564	3	0	0	3	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0008	564	2	0	1	0	0	1	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0009	564	1	0	0	1	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0010	564	1	1	0	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0011	564	1	0	0	1	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0012	564	1	0	1	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	c0013	564	1	0	0	0	0	1	copy fasta	CCDC201	chr7	45854994	45878082
CCDC22_chrX_49230470_49255520	1/0	c0001	1884	141	43	18	66	4	9	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/1	c0002	1884	139	30	29	48	9	22	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0003	1884	3	0	0	3	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0004	1884	3	3	0	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0005	1884	1	0	1	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0006	1885	1	0	0	1	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0007	1884	1	0	1	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0008	1884	1	1	0	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0009	1881	1	0	0	1	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0010	1884	1	0	0	1	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0011	1884	1	0	1	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0012	1884	1	1	0	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0013	1885	1	0	0	1	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	c0014	1884	1	0	0	0	0	1	copy fasta	CCDC22	chrX	49230470	49255520
CCDC24_chr1_43986599_44001528	1/1	c0001	924	371	92	67	165	12	33	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/0	c0002	924	32	0	3	26	0	3	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/0	c0003	924	1	1	0	0	0	0	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/0	c0004	924	1	1	0	0	0	0	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/0	c0005	924	1	0	0	1	0	0	copy fasta	CCDC24	chr1	43986599	44001528
CCDC25_chr8_27728316_27777640	1/1	c0001	627	368	90	64	164	8	40	copy fasta	CCDC25	chr8	27728316	27777640
CCDC27_chr1_3747450_3776645	1/1	c0001	1971	177	7	34	99	9	26	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0002	1971	36	3	19	0	6	8	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0003	1971	31	4	7	15	0	5	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0004	1971	23	2	4	13	0	4	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0005	1971	15	0	1	14	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0006	1971	13	12	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0007	1971	11	2	6	1	0	2	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0008	1971	10	10	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0009	1971	9	0	0	9	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0010	1971	8	0	0	7	0	1	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0011	1971	7	7	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0012	1971	5	4	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0013	1971	4	4	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0014	1971	4	0	0	4	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0015	1971	4	1	1	0	2	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0016	1971	3	0	0	3	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0017	1971	3	3	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0018	1971	3	2	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0019	1971	3	1	2	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0020	1971	3	3	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0021	1971	3	3	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0022	1971	3	0	0	3	0	0	copy fasta	CCDC27	chr1	3747450	3776645