JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC27_chr1_3747450_3776645	0/0	c0023	1971	2	0	0	0	0	2	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0024	1971	2	1	0	0	1	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0025	1971	2	2	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0026	1971	2	2	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0027	1971	2	2	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0028	1971	2	2	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0029	1971	2	2	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0030	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0031	1971	1	0	0	1	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0032	1971	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0033	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0034	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0035	1971	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0036	1971	1	0	0	0	0	1	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0037	1971	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0038	1971	1	0	0	1	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0039	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0040	1971	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0041	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0042	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0043	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0044	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0045	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0046	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0047	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0048	1971	1	0	0	1	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0049	1971	1	0	0	1	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0050	1971	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0051	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0052	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0053	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0054	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0055	1971	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0056	1971	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0057	1971	1	0	0	0	0	1	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0058	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0059	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0060	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0061	1971	1	0	0	1	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0062	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0063	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0064	1971	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	c0065	1971	1	0	0	1	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC28A_chr6_138768769_138798319	1/1	c0001	555	366	96	64	162	10	32	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28B_chr1_32195595_32210387	1/1	c0001	603	396	86	66	187	13	42	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	c0002	603	14	2	4	5	1	2	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	c0003	603	2	1	1	0	0	0	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	c0004	603	1	0	1	0	0	0	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	c0005	614	1	0	0	1	0	0	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	c0006	603	1	0	0	1	0	0	copy fasta	CCDC28B	chr1	32195595	32210387