Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACP4_chr19_50785415_50800219	0/0	c0007	1281	2	0	2	0	0	0	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	c0008	1281	1	0	1	0	0	0	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	c0009	1281	1	1	0	0	0	0	copy fasta	ACP4	chr19	50785415	50800219
ACP5_chr19_11569660_11582645	1/1	c0001	978	355	55	69	177	14	38	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0002	978	25	23	2	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0003	978	25	0	7	7	3	8	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0004	978	12	12	0	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0005	978	11	0	0	11	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0006	978	4	3	0	0	1	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0007	978	2	2	0	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0008	978	1	0	0	1	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0009	978	1	0	0	1	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0010	978	1	1	0	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0011	978	1	0	0	0	0	1	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0012	978	1	0	0	1	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0013	1017	1	0	0	0	0	1	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0014	978	1	1	0	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0015	978	1	0	1	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0016	978	1	0	1	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	c0017	978	1	1	0	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP6_chr1_147637230_147675524	0/1	c0001	1287	177	38	34	79	8	17	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	1/0	c0002	1287	101	11	17	54	4	14	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0003	1287	101	22	7	61	2	9	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0004	1287	11	11	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0005	1287	2	1	1	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0006	1287	2	2	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0007	1287	2	2	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0008	1287	2	0	2	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0009	1287	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0010	1287	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0011	1287	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0012	1287	1	0	1	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0013	1287	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	c0014	1287	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP7_chr19_39079368_39116493	0/1	c0001	1317	111	16	25	48	8	13	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0002	1317	103	2	23	57	5	16	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	1/0	c0003	1317	76	13	15	41	2	4	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0004	1317	52	5	13	28	1	5	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0005	1317	15	15	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0006	1317	15	14	1	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0007	1317	6	5	1	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0008	1317	5	5	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0009	1317	4	4	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0010	1317	4	3	0	0	0	1	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0011	1317	3	0	3	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0012	1317	2	0	2	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0013	1317	1	1	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0014	1317	1	0	1	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0015	1317	1	0	0	1	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0016	1317	1	1	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493