JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC28B_chr1_32195595_32210387	0/0	c0007	603	1	1	0	0	0	0	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC30_chr1_42458286_42662190	1/1	c0001	2817	131	25	34	43	7	20	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0002	2817	53	2	5	40	1	5	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0003	2817	42	6	10	21	3	2	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0004	2817	36	6	3	20	0	7	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0005	2817	10	10	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0006	2817	7	7	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0007	2817	6	5	1	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0008	2817	5	2	2	0	0	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0009	2817	4	4	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0010	2817	4	0	1	3	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0011	2817	3	3	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0012	2817	2	2	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0013	2817	2	1	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0014	2817	2	1	1	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0015	2817	2	1	1	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0016	2817	2	0	0	0	0	2	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0017	2817	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0018	2817	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0019	2817	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0020	2817	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0021	2817	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0022	2817	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0023	2817	1	0	0	0	1	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0024	2817	1	0	0	0	0	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0025	2817	1	0	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0026	2817	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0027	2817	1	0	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0028	2817	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	c0029	2817	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC32_chr15_40548099_40570042	1/1	c0001	558	327	71	46	169	7	32	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	c0002	558	70	16	20	19	5	10	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	c0003	558	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	c0004	558	1	0	0	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	c0005	558	1	0	0	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC33_chr15_74231326_74341141	1/0	c0001	2268	116	33	22	47	3	10	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0002	2265	40	10	4	24	2	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0003	2268	39	14	6	14	0	5	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/1	c0004	2265	21	2	6	1	3	8	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0005	2268	9	0	0	8	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0006	2268	6	0	0	5	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0007	2268	6	0	1	4	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0008	2268	5	5	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0009	2268	5	0	0	3	1	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0010	2265	4	0	2	2	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0011	2268	3	2	1	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0012	2268	3	3	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0013	2265	3	0	2	0	1	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0014	2268	2	0	1	1	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0015	2268	2	0	0	2	0	0	copy fasta	CCDC33	chr15	74231326	74341141