JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC33_chr15_74231326_74341141	0/0	c0016	2268	2	0	0	1	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0017	2268	2	2	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0018	2265	2	0	0	1	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0019	2265	2	0	0	2	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0020	2265	2	2	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0021	2268	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0022	2268	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0023	2268	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0024	2268	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0025	2268	1	0	1	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0026	2268	1	0	0	0	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0027	2268	1	0	0	1	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0028	2265	1	0	0	1	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0029	2265	1	0	0	0	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0030	2265	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0031	2265	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0032	2265	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0033	2265	1	0	0	1	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	c0034	2265	1	0	0	0	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC34_chr11_27333512_27368215	1/1	c0001	1122	264	67	32	124	8	31	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	c0002	1122	59	8	18	19	5	9	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	c0003	1104	12	11	1	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	c0004	1122	10	3	6	0	1	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	c0005	1122	7	0	0	7	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	c0006	1122	2	2	0	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	c0007	1122	1	0	1	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	c0008	1122	1	0	1	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	c0009	1122	1	0	1	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	c0010	1140	1	1	0	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC38_chr12_95862048_95947614	1/0	c0001	1692	78	7	25	34	6	5	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0002	1692	74	14	13	29	4	14	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0003	1692	53	5	0	45	0	3	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/1	c0004	1692	44	20	11	8	1	3	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0005	1692	34	17	2	12	0	3	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0006	1692	13	0	4	3	1	5	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0007	1692	12	3	2	5	0	2	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0008	1692	10	8	2	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0009	1692	8	8	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0010	1692	4	4	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0011	1692	3	0	0	3	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0012	1692	3	0	0	1	0	2	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0013	1692	3	0	2	0	0	1	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0014	1692	2	2	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0015	1692	2	1	1	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0016	1692	2	2	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0017	1692	2	2	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0018	1692	1	1	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0019	1692	1	0	0	1	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	c0020	1692	1	0	0	1	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC39_chr3_180609008_180684489	1/1	c0001	2826	133	13	23	71	8	16	copy fasta	CCDC39	chr3	180609008	180684489