JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC39_chr3_180609008_180684489	0/0	c0002	2826	29	8	15	0	3	3	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0003	2826	20	17	3	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0004	2826	15	8	3	0	1	3	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0005	2826	6	6	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0006	2826	6	5	1	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0007	2826	5	2	3	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0008	2826	5	5	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0009	2826	3	0	0	3	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0010	2826	3	0	0	3	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0011	2826	3	2	1	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0012	2826	3	3	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0013	2826	3	3	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0014	2826	3	3	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0015	2826	3	3	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0016	2826	2	0	0	0	0	2	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0017	2826	1	0	0	0	1	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0018	2826	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0019	2826	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0020	2826	1	0	0	1	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0021	2826	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0022	2826	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0023	2826	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0024	2826	1	0	1	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0025	2826	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0026	2826	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0027	2826	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	c0028	2826	1	0	0	0	1	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC3_chr10_12891625_13006713	0/1	c0001	813	382	81	80	167	14	39	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	1/0	c0002	813	5	4	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	c0003	813	2	0	0	1	0	1	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	c0004	813	1	0	0	1	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	c0005	813	1	0	0	1	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	c0006	813	1	1	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC40_chr17_80031642_80105613	0/0	c0001	3429	54	2	12	33	2	5	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0002	3429	53	0	10	36	1	6	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0003	3429	43	6	12	15	2	8	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0004	3429	25	5	0	17	1	2	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0005	3429	16	12	2	2	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0006	3429	12	0	0	12	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0007	3429	12	0	0	8	0	4	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0008	3429	9	1	3	0	2	3	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0009	3429	8	7	1	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0010	3429	8	1	7	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0011	3429	7	1	4	1	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0012	3429	6	0	0	6	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0013	3429	6	4	0	2	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0014	3429	6	1	1	3	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0015	3429	5	1	3	0	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0016	3429	5	0	4	0	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0017	3429	4	4	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613