JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC40_chr17_80031642_80105613	0/0	c0018	3429	4	0	4	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0019	3429	4	1	2	0	1	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0020	3429	4	0	0	0	2	2	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0021	3429	3	2	1	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0022	3429	3	0	0	0	0	3	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0023	3429	3	3	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0024	3429	3	3	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0025	3429	3	0	0	2	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0026	3429	3	3	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0027	3429	3	1	2	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0028	3429	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0029	3429	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0030	3429	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0031	3429	2	0	1	0	1	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0032	3429	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0033	3429	2	0	0	0	2	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0034	3429	2	1	0	0	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0035	3429	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0036	3429	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0037	3429	2	0	0	2	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0038	3429	2	0	0	2	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0039	3429	2	0	0	1	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	1/0	c0040	3429	2	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0041	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0042	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0043	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0044	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0045	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0046	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0047	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0048	3429	1	0	1	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0049	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0050	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0051	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0052	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0053	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0054	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0055	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0056	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0057	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0058	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0059	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0060	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0061	3429	1	0	0	0	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0062	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/1	c0063	3429	1	0	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0064	3429	1	0	1	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0065	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0066	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0067	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613