JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC40_chr17_80031642_80105613	0/0	c0068	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0069	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0070	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0071	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0072	3448	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0073	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0074	3429	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0075	3429	1	0	0	0	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0076	3429	1	0	1	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0077	3429	1	0	0	0	1	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0078	3429	1	0	0	0	1	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0079	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	c0080	3429	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC42_chr17_8724935_8749836	1/1	c0001	951	312	59	69	140	15	27	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0002	951	57	5	10	34	1	7	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0003	951	21	17	3	0	0	1	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0004	951	6	6	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0005	951	5	5	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0006	951	2	0	0	0	0	2	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0007	951	1	1	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0008	951	1	1	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0009	951	1	0	0	0	0	1	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0010	951	1	1	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0011	951	1	0	1	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0012	951	1	0	1	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	c0013	951	1	1	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC43_chr17_44672440_44694776	1/1	c0001	675	359	89	76	148	14	30	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	c0002	675	1	1	0	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	c0003	675	1	1	0	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	c0004	675	1	1	0	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC47_chr17_63740255_63778597	1/1	c0001	1452	338	77	61	148	18	32	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	c0002	1452	12	11	1	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	c0003	1452	1	1	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	c0004	1452	1	1	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC50_chr3_191324394_191403659	1/0	c0001	1449	127	10	30	67	3	16	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0002	1449	97	37	7	48	2	3	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/1	c0003	1449	88	18	26	28	2	13	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0004	1449	60	11	5	37	1	6	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0005	1449	6	0	0	6	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0006	1449	6	0	3	0	0	3	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0007	1449	4	3	1	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0008	1449	4	3	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0009	1449	3	2	1	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0010	1449	3	0	0	3	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0011	1449	2	0	0	0	0	2	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0012	1449	1	0	0	0	0	1	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0013	1449	1	1	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0014	1449	1	0	0	0	0	1	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0015	1449	1	0	0	0	0	1	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	c0016	1449	1	0	1	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659