JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC50_chr3_191324394_191403659	0/0	c0017	1449	1	1	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC51_chr3_48427173_48445119	0/1	c0001	1236	242	64	45	91	13	28	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	1/0	c0002	1236	131	20	26	66	5	13	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	c0003	1236	4	0	0	4	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	c0004	1236	3	3	0	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	c0005	1236	2	2	0	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	c0006	1236	1	0	0	1	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	c0007	1236	1	0	1	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	c0008	1236	1	0	0	0	0	1	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	c0009	1236	1	1	0	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC54_chr3_107372439_107383635	0/0	c0001	987	203	33	32	114	4	20	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	1/1	c0002	987	132	47	36	18	7	22	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0003	987	35	5	8	14	4	4	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0004	982	8	0	0	8	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0005	987	6	0	1	4	0	1	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0006	987	4	0	0	4	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0007	987	2	2	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0008	987	2	1	1	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0009	987	2	2	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0010	987	1	0	0	0	1	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0011	987	1	0	0	0	0	1	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0012	987	1	1	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0013	987	1	1	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0014	987	1	1	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	c0015	987	1	1	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC57_chr17_82096470_82217842	0/0	c0001	3084	89	15	19	37	5	13	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0002	3084	41	10	10	11	0	10	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0003	3084	26	5	5	7	2	7	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0004	3084	24	10	9	1	1	3	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0005	3084	8	7	1	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/1	c0006	3084	8	0	3	0	4	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0007	3084	7	7	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0008	3084	6	5	1	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0009	3084	5	5	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0010	3084	5	5	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0011	3084	4	4	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0012	3084	3	3	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0013	3084	3	0	0	3	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0014	3084	2	2	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0015	3084	2	0	0	2	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0016	3084	2	0	0	2	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0017	3084	2	2	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0018	3057	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0019	3084	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0020	3084	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0021	3084	1	0	0	0	0	1	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0022	3084	1	0	1	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0023	3084	1	0	0	0	0	1	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	1/0	c0024	3084	1	0	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0025	3084	1	0	1	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842