JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC57_chr17_82096470_82217842	0/0	c0026	3084	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0027	3084	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0028	3084	1	0	0	0	0	1	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0029	3084	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0030	3084	1	0	0	1	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0031	3084	1	0	0	1	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	c0032	3084	1	0	0	1	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC59_chr12_82347303_82363387	1/0	c0001	726	333	85	54	142	15	36	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	c0002	726	5	1	2	0	2	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	c0003	726	3	0	3	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/1	c0004	726	2	0	0	0	1	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	c0005	726	1	0	1	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	c0006	726	1	1	0	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	c0007	726	1	1	0	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC60_chr12_119329729_119546040	1/1	c0001	1653	158	45	31	56	10	14	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0002	1653	59	12	19	22	2	4	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0003	1653	14	1	10	0	3	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0004	1653	4	3	1	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0005	1653	4	4	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0006	1653	4	1	2	0	0	1	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0007	1653	3	0	3	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0008	1653	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0009	1653	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0010	1653	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0011	1653	1	0	0	0	1	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0012	1653	1	0	0	0	0	1	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0013	1653	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0014	1653	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0015	1653	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0016	1653	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	c0017	1653	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC61_chr19_45990467_46023616	0/1	c0001	1539	220	47	46	91	12	23	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0002	1539	89	16	17	41	3	12	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0003	1539	41	4	6	22	0	9	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	1/0	c0004	1539	26	0	0	23	0	2	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0005	1539	22	9	11	2	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0006	1539	6	6	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0007	1521	4	4	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0008	1521	4	4	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0009	1539	2	0	0	0	1	1	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0010	1521	1	1	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0011	1539	1	1	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0012	1539	1	1	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0013	1539	1	0	0	1	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0014	1539	1	1	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0015	1539	1	0	1	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0016	1539	1	1	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0017	1539	1	1	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0018	1539	1	0	0	0	0	1	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0019	1539	1	0	0	1	0	0	copy fasta	CCDC61	chr19	45990467	46023616