JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC61_chr19_45990467_46023616	0/0	c0020	1539	1	0	0	1	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0021	1539	1	0	0	1	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0022	1539	1	0	1	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	c0023	1539	1	0	0	1	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC62_chr12_122769572_122832528	1/1	c0001	2055	259	55	48	113	11	30	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0002	2055	9	8	1	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0003	2055	7	4	0	0	0	3	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0004	2055	5	5	0	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0005	2055	4	4	0	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0006	2055	3	3	0	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0007	2055	2	2	0	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0008	2055	1	0	0	0	1	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0009	2055	1	0	0	0	0	1	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0010	2055	1	0	0	1	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0011	2055	1	1	0	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0012	2050	1	0	0	1	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0013	2055	1	0	0	0	0	1	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0014	2055	1	0	1	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0015	2055	1	0	0	0	0	1	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	c0016	2055	1	0	0	1	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC63_chr12_110841987_110912535	1/1	c0001	1692	224	47	31	104	9	31	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0002	1692	37	9	18	0	6	4	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0003	1692	6	6	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0004	1692	3	0	0	3	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0005	1692	2	2	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0006	1692	2	2	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0007	1692	2	2	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0008	1692	1	0	0	1	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0009	1692	1	0	1	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0010	1692	1	0	0	0	0	1	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0011	1692	1	0	1	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0012	1692	1	0	0	0	1	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0013	1692	1	1	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0014	1692	1	0	1	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0015	1692	1	1	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0016	1692	1	0	0	0	0	1	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0017	1692	1	0	0	0	0	1	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0018	1692	1	1	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	c0019	1692	1	1	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC65_chr12_48899133_48926576	1/1	c0001	1455	232	70	34	86	9	31	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	c0002	1455	118	8	31	65	3	11	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	c0003	1455	11	10	1	0	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	c0004	1455	6	1	4	0	0	1	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	c0005	1455	3	3	0	0	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	c0006	1455	2	0	0	2	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	c0007	1455	1	0	0	0	0	1	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	c0008	1455	1	0	0	1	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	c0009	1455	1	0	1	0	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	c0010	1455	1	0	1	0	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC66_chr3_56552175_56626837	0/1	c0001	2860	120	26	14	66	4	9	copy fasta	CCDC66	chr3	56552175	56626837