JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC66_chr3_56552175_56626837	0/0	c0002	2850	90	9	10	55	0	16	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0003	2857	58	8	17	19	7	7	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0004	2850	25	5	2	17	0	1	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0005	2860	12	1	0	6	0	5	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0006	2850	10	0	4	6	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0007	2850	8	8	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0008	2860	8	8	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0009	2850	6	5	1	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0010	2850	4	4	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0011	2850	3	3	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0012	2850	2	0	0	0	0	2	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0013	2850	2	0	2	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0014	2850	2	2	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0015	2850	2	2	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0016	2860	2	2	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0017	2850	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	1/0	c0018	2847	1	0	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0019	2850	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0020	2850	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0021	2850	1	0	0	1	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0022	2850	1	0	0	0	0	1	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0023	2850	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0024	2850	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0025	2850	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0026	2860	1	0	0	1	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0027	2857	1	0	0	1	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0028	2857	1	0	0	1	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0029	2857	1	0	0	1	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0030	2860	1	0	0	0	1	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0031	2860	1	0	0	1	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0032	2860	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0033	2860	1	0	0	0	0	1	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	c0034	2860	1	0	0	1	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC68_chr18_54896509_54964461	1/1	c0001	1008	222	66	46	68	11	29	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	c0002	1008	54	1	9	35	2	7	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	c0003	1008	29	13	1	10	0	5	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	c0004	1008	11	7	3	0	0	1	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	c0005	1008	3	0	2	0	1	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	c0006	1008	2	0	0	0	0	2	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	c0007	1008	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	c0008	1008	1	0	1	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	c0009	1008	1	1	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	c0010	1008	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	c0011	1008	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC69_chr5_151176052_151229092	1/1	c0001	891	162	35	17	91	5	12	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0002	891	146	28	29	66	7	16	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0003	891	70	3	23	23	6	15	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0004	891	8	7	1	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0005	891	8	8	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0006	891	6	0	0	5	0	1	copy fasta	CCDC69	chr5	151176052	151229092