JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC73_chr11_32597721_32799662	1/0	c0002	3240	108	21	17	51	1	17	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	c0003	3240	60	21	18	14	2	5	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	c0004	3240	4	0	0	4	0	0	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	c0005	3240	2	2	0	0	0	0	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	c0006	3240	1	0	0	0	0	1	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	c0007	3240	1	1	0	0	0	0	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	c0008	3240	1	0	1	0	0	0	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	c0009	3240	1	0	0	0	1	0	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	c0010	3240	1	0	0	0	0	1	copy fasta	CCDC73	chr11	32597721	32799662
CCDC74A_chr2_131522888_131538666	0/0	c0001	939	193	12	33	130	4	14	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	1/1	c0002	939	151	36	33	43	9	28	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0003	939	18	0	2	13	2	1	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0004	939	15	9	5	0	0	1	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0005	939	13	12	1	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0006	939	7	7	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0007	939	6	3	3	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0008	939	5	4	0	0	0	1	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0009	939	4	1	0	2	0	1	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0010	939	3	2	1	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0011	939	2	0	0	1	0	1	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0012	939	2	2	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0013	939	2	0	0	2	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0014	939	2	0	0	2	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0015	939	2	0	0	2	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0016	939	2	0	0	0	1	1	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0017	939	2	2	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0018	939	1	0	0	1	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0019	925	1	1	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0020	939	1	0	1	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0021	939	1	1	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0022	939	1	0	0	1	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0023	939	1	0	0	0	0	1	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0024	939	1	0	0	1	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0025	939	1	0	0	1	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0026	939	1	0	1	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0027	939	1	0	0	0	0	1	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	c0028	939	1	0	0	1	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74B_chr2_130134287_130150112	1/0	c0001	945	186	20	27	104	5	29	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0002	945	137	21	31	64	8	13	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/1	c0003	945	27	1	13	5	4	3	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0004	945	16	16	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0005	945	14	11	3	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0006	945	11	10	1	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0007	945	6	6	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0008	945	6	0	0	6	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0009	945	6	5	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0010	945	5	0	0	5	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0011	945	3	0	0	2	0	1	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0012	945	3	0	3	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0013	945	2	0	2	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112