JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC74B_chr2_130134287_130150112	0/0	c0014	945	2	0	0	2	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0015	945	2	2	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0016	945	2	0	0	2	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0017	945	2	0	0	2	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0018	945	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0019	945	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0020	945	1	0	0	0	1	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0021	944	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0022	945	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0023	945	1	0	0	0	0	1	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0024	945	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0025	945	1	0	0	0	0	1	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0026	945	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0027	945	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0028	945	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0029	945	1	0	1	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0030	945	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0031	945	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0032	945	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0033	945	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0034	945	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0035	945	1	0	1	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0036	945	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	c0037	945	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC77_chr12_396644_447642	1/0	c0001	1467	205	30	47	93	7	27	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0002	1467	102	19	21	45	2	15	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0003	1467	78	20	4	51	0	3	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/1	c0004	1467	27	7	5	8	3	3	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0005	1467	7	7	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0006	1429	4	4	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0007	1467	3	3	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0008	1467	1	0	0	1	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0009	1467	1	1	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0010	1467	1	0	0	1	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0011	1467	1	0	0	1	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0012	1467	1	1	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	c0013	1467	1	0	1	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC78_chr16_717582_731443	0/1	c0001	1413	244	35	48	116	7	37	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	1/0	c0002	1413	91	19	25	36	5	5	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0003	1413	18	17	1	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0004	1413	9	9	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0005	1413	3	3	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0006	1413	3	3	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0007	1413	2	0	0	0	0	2	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0008	1413	2	2	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0009	1413	2	0	0	0	0	2	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0010	1413	2	1	1	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0011	1413	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0012	1413	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0013	1413	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443