JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC78_chr16_717582_731443	0/0	c0014	1413	1	0	0	0	0	1	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0015	1413	1	0	0	0	0	1	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0016	1413	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0017	1413	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0018	1413	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0019	1413	1	0	0	1	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0020	1413	1	0	0	1	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0021	1396	1	0	0	1	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0022	1413	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0023	1413	1	0	1	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	c0024	1413	1	0	0	1	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC7_chr10_32441140_32887864	0/0	c0001	4158	117	7	14	81	4	11	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0002	4158	68	23	8	29	3	5	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0003	4158	51	1	15	20	4	11	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0004	4158	48	0	11	25	1	11	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0005	4158	19	16	3	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0006	4158	9	7	2	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	1/0	c0007	4158	7	6	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0008	4158	7	6	1	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0009	4158	6	5	1	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0010	4158	5	4	1	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/1	c0011	4156	5	1	0	0	2	1	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0012	4158	3	2	1	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0013	4158	2	0	0	2	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0014	4158	2	0	2	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0015	4158	2	2	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0016	4158	2	2	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0017	4158	2	0	0	2	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0018	4158	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0019	4158	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0020	4158	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0021	4158	1	1	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0022	4158	1	1	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0023	4158	1	1	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0024	4158	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0025	4158	1	1	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0026	4158	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0027	4158	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0028	4158	1	0	1	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0029	4158	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	c0030	4158	1	0	0	0	0	1	copy fasta	CCDC7	chr10	32441140	32887864
CCDC80_chr3_112591797_112646143	1/1	c0001	2853	329	64	63	160	10	30	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0002	2853	13	13	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0003	2853	9	5	1	0	0	3	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0004	2853	4	4	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0005	2853	3	0	0	3	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0006	2853	2	2	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0007	2853	2	0	0	0	0	2	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0008	2853	2	2	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0009	2853	2	0	0	2	0	0	copy fasta	CCDC80	chr3	112591797	112646143