JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC80_chr3_112591797_112646143	0/0	c0010	2853	2	0	0	2	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0011	2853	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0012	2853	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0013	2853	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0014	2853	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0015	2853	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0016	2853	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0017	2853	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0018	2853	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0019	2853	1	0	0	0	0	1	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0020	2853	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0021	2853	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	c0022	2853	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC81_chr11_86369887_86428106	0/0	c0001	1959	176	36	17	105	3	15	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	1/0	c0002	1959	67	10	20	25	4	7	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/1	c0003	1959	54	7	18	21	0	7	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0004	1959	23	5	10	0	1	7	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0005	1959	21	0	3	17	0	1	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0006	1959	14	0	1	10	2	1	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0007	1959	8	8	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0008	1959	7	7	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0009	1959	5	1	0	0	0	4	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0010	1959	5	0	1	3	0	1	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0011	1959	5	5	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0012	1959	3	1	1	0	1	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0013	1959	3	0	0	1	1	1	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0014	1959	3	0	0	2	0	1	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0015	1959	2	2	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0016	1959	1	1	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0017	1959	1	0	0	0	0	1	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0018	1959	1	1	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0019	1959	1	0	0	1	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0020	1959	1	0	0	1	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0021	1959	1	0	1	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0022	1959	1	1	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	c0023	1959	1	1	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC82_chr11_96347773_96394912	1/1	c0001	1635	252	57	48	106	9	30	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	c0002	1635	107	20	15	56	7	9	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	c0003	1635	9	8	1	0	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	c0004	1635	6	6	0	0	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	c0005	1635	2	0	0	0	0	2	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	c0006	1635	2	0	0	2	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	c0007	1635	1	0	0	1	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	c0008	1635	1	1	0	0	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	c0009	1635	1	0	0	1	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	c0010	1635	1	0	0	0	0	1	copy fasta	CCDC82	chr11	96347773	96394912
CCDC83_chr11_85850383_85925013	1/1	c0001	1242	263	78	37	115	5	26	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	c0002	1242	30	14	11	0	2	3	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	c0003	1242	24	0	5	14	1	4	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	c0004	1242	7	0	2	3	0	2	copy fasta	CCDC83	chr11	85850383	85925013