JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC83_chr11_85850383_85925013	0/0	c0005	1242	4	0	0	3	0	1	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	c0006	1242	2	2	0	0	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	c0007	1242	2	0	0	2	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	c0008	1242	1	0	1	0	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	c0009	1242	1	0	0	1	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC85A_chr2_56178990_56391172	0/0	c0001	1662	183	29	43	82	6	23	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	1/1	c0002	1662	68	38	7	15	2	4	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	c0003	1662	44	6	2	28	0	8	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	c0004	1662	3	2	1	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	c0005	1662	3	3	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	c0006	1662	2	2	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	c0007	1662	1	0	0	0	0	1	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	c0008	1662	1	0	0	1	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	c0009	1662	1	0	1	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	c0010	1662	1	0	0	1	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	c0011	1662	1	0	0	1	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85B_chr11_65885673_65896635	1/1	c0001	609	419	87	75	197	12	46	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85B_chr11_65885673_65896635	0/0	c0002	609	4	4	0	0	0	0	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85B_chr11_65885673_65896635	0/0	c0003	609	3	2	1	0	0	0	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85B_chr11_65885673_65896635	0/0	c0004	609	1	1	0	0	0	0	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85B_chr11_65885673_65896635	0/0	c0005	609	1	0	0	1	0	0	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85C_chr14_99495190_99609207	0/1	c0001	1260	153	18	32	64	16	22	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0002	1260	65	19	11	34	1	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	1/0	c0003	1260	47	30	8	0	1	7	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0004	1260	9	9	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0005	1260	7	0	0	7	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0006	1260	7	7	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0007	1260	2	2	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0008	1260	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0009	1260	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0010	1260	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0011	1260	1	0	0	0	0	1	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0012	1260	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0013	1260	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0014	1260	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0015	1260	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0016	1260	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	c0017	1260	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC86_chr11_60837113_60856081	0/0	c0001	1083	156	20	18	92	7	19	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	1/0	c0002	1083	145	56	35	37	6	10	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/1	c0003	1083	57	12	13	20	3	8	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	c0004	1083	32	5	8	16	2	1	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	c0005	1083	3	0	0	3	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	c0006	1083	1	0	0	0	0	1	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	c0007	1083	1	0	0	1	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	c0008	1083	1	0	0	0	0	1	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	c0009	1083	1	0	1	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	c0010	1083	1	1	0	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	c0011	1083	1	0	1	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	c0012	1083	1	1	0	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081