JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC86_chr11_60837113_60856081	0/0	c0013	1083	1	0	0	1	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	c0014	1083	1	1	0	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC87_chr11_66585176_66598063	1/1	c0001	2550	235	71	32	103	9	18	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0002	2550	136	10	28	74	2	22	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0003	2550	2	2	0	0	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0004	2550	2	1	0	0	0	1	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0005	2550	2	0	0	2	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0006	2550	1	1	0	0	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0007	2550	1	0	0	1	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0008	2550	1	1	0	0	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0009	2550	1	0	0	0	0	1	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0010	2550	1	0	0	1	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0011	2550	1	0	0	1	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0012	2550	1	0	0	0	1	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0013	2550	1	0	0	1	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	c0014	2550	1	0	0	1	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC88A_chr2_55282842_55424856	1/1	c0001	5616	264	56	37	130	9	30	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0002	5616	16	15	1	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0003	5616	9	0	0	9	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0004	5616	6	0	3	0	3	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0005	5616	4	0	0	4	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0006	5616	2	2	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0007	5616	2	0	0	2	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0008	5616	2	0	0	2	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0009	5616	2	0	0	2	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0010	5616	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0011	5616	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0012	5616	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0013	5630	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0014	5616	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0015	5616	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0016	5616	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0017	5616	1	0	1	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	c0018	5616	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88B_chr11_64335204_64362534	0/0	c0001	4431	106	36	15	47	3	5	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0002	4431	77	4	22	35	5	11	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/1	c0003	4431	38	3	4	16	3	11	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0004	4431	36	0	9	27	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0005	4431	35	18	0	15	0	2	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	1/0	c0006	4431	11	10	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0007	4431	7	0	6	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0008	4431	5	5	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0009	4431	5	0	0	0	0	5	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0010	4431	5	1	0	4	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0011	4431	4	0	0	4	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0012	4431	4	4	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0013	4431	4	0	2	0	0	2	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0014	4431	4	0	0	4	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0015	4431	4	0	4	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0016	4431	4	1	0	0	2	1	copy fasta	CCDC88B	chr11	64335204	64362534