JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC88B_chr11_64335204_64362534	0/0	c0017	4431	4	3	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0018	4431	4	0	0	4	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0019	4431	3	3	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0020	4431	2	0	0	0	1	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0021	4431	2	0	0	0	2	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0022	4431	2	0	0	0	0	2	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0023	4431	2	1	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0024	4431	2	0	2	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0025	4431	2	1	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0026	4431	2	0	2	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0027	4431	1	0	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0028	4431	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0029	4431	1	0	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0030	4431	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0031	4431	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0032	4431	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0033	4431	1	0	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0034	4431	1	0	0	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0035	4431	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0036	4431	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0037	4431	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0038	4431	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0039	4431	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0040	4431	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0041	4431	1	0	0	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0042	4431	1	0	0	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0043	4431	1	0	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0044	4431	1	0	0	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0045	4431	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0046	4431	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0047	4431	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0048	4431	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0049	4431	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0050	4431	1	0	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0051	4431	1	0	0	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	c0052	4431	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88C_chr14_91266323_91422820	0/0	c0001	6087	59	10	16	20	4	9	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/1	c0002	6087	26	4	6	11	1	3	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	1/0	c0003	6087	22	0	1	14	0	6	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0004	6087	20	4	10	2	1	3	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0005	6087	12	0	0	11	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0006	6087	11	3	6	1	1	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0007	6087	10	2	2	5	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0008	6087	9	0	1	8	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0009	6087	7	7	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0010	6087	5	5	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0011	6087	5	1	1	2	1	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0012	6087	4	4	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0013	6087	4	0	0	4	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0014	6087	4	3	1	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820