JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC88C_chr14_91266323_91422820	0/0	c0065	6087	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0066	6087	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0067	6087	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0068	6087	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0069	6087	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0070	6087	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0071	6087	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0072	6087	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0073	6087	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0074	6087	1	0	0	0	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0075	6087	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	c0076	6087	1	0	0	0	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC89_chr11_85678848_85691195	1/1	c0001	1125	444	90	74	215	18	45	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	c0002	1125	3	0	0	3	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	c0003	1125	2	0	0	2	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	c0004	1125	1	0	0	0	0	1	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	c0005	1125	1	0	1	0	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	c0006	1125	1	0	1	0	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	c0007	1125	1	1	0	0	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	c0008	1125	1	1	0	0	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC8_chr19_46405329_46418564	1/1	c0001	1617	240	58	61	88	14	17	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0002	1617	125	16	13	71	2	23	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0003	1617	40	3	1	30	2	4	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0004	1617	9	6	3	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0005	1617	6	1	1	2	0	2	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0006	1617	6	0	0	6	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0007	1617	6	0	0	6	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0008	1617	5	5	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0009	1617	4	0	0	1	0	3	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0010	1617	3	3	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0011	1617	3	3	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0012	1617	2	0	2	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0013	1617	2	2	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0014	1617	1	0	1	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0015	1617	1	0	0	1	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0016	1617	1	0	0	0	0	1	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0017	1617	1	0	0	1	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	c0018	1617	1	1	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC90B_chr11_83254081_83291367	0/0	c0001	765	184	69	26	64	5	20	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	1/0	c0002	765	122	5	29	72	6	9	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/1	c0003	765	86	20	12	42	3	8	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	c0004	765	18	0	1	14	0	3	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	c0005	765	2	0	2	0	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	c0006	765	1	0	0	1	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	c0007	765	1	0	0	1	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC91_chr12_28185456_28555166	0/0	c0001	1326	85	18	18	35	4	10	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	1/0	c0002	1326	81	9	17	40	4	10	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/1	c0003	1326	34	2	7	16	4	4	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	c0004	1326	23	17	6	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	c0005	1326	8	8	0	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166