JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC91_chr12_28185456_28555166	0/0	c0006	1326	5	4	1	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	c0007	1326	3	3	0	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	c0008	1326	1	0	0	1	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	c0009	1326	1	0	1	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	c0010	1326	1	1	0	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC92B_chr17_2715801_2754652	1/1	c0001	768	239	76	31	93	11	26	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	c0002	768	172	3	52	91	6	20	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	c0003	768	2	0	0	0	0	2	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	c0004	768	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	c0005	768	1	0	0	0	1	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	c0006	768	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	c0007	768	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	c0008	768	1	0	1	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92_chr12_123930626_123977831	1/1	c0001	996	153	54	33	33	4	27	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	c0002	996	79	30	18	21	5	5	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	c0003	996	4	4	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	c0004	996	3	0	3	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	c0005	996	3	2	1	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	c0006	996	2	0	1	0	1	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	c0007	996	2	0	2	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	c0008	996	1	1	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	c0009	996	1	0	0	1	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	c0010	996	1	0	0	1	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	c0011	996	1	1	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC93_chr2_117910481_118019070	1/0	c0001	1896	204	30	42	104	3	24	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	c0002	1896	75	29	13	18	4	11	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/1	c0003	1896	20	8	8	0	2	1	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	c0004	1896	6	6	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	c0005	1896	5	5	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	c0006	1896	4	0	0	0	0	4	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	c0007	1896	3	2	1	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	c0008	1896	2	2	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	c0009	1896	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	c0010	1896	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	c0011	1896	1	0	0	0	1	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC96_chr4_7035849_7048001	0/1	c0001	1668	207	52	45	82	6	21	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0002	1668	120	24	23	54	9	10	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0003	1668	72	2	9	47	1	13	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	1/0	c0004	1668	14	13	0	0	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0005	1668	5	3	2	0	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0006	1668	3	3	0	0	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0007	1668	2	0	0	2	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0008	1668	2	0	2	0	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0009	1668	2	0	0	0	0	2	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0010	1668	2	0	0	2	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0011	1668	1	1	0	0	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0012	1668	1	0	1	0	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	c0013	1668	1	0	0	1	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC97_chr19_41305172_41329873	1/1	c0001	1032	337	90	70	123	12	40	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	c0002	1032	6	0	0	6	0	0	copy fasta	CCDC97	chr19	41305172	41329873