Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AARS1_chr16_70247298_70294506	0/0	c0011	2907	1	0	0	0	0	1	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0012	2907	1	0	0	0	0	1	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0013	2907	1	0	0	1	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0014	2907	1	0	0	1	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0015	2907	1	0	0	0	0	1	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0016	2907	1	0	1	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0017	2907	1	0	0	0	0	1	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0018	2907	1	1	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0019	2907	1	0	0	0	0	1	copy fasta	AARS1	chr16	70247298	70294506
AARS2_chr6_44293731_44318347	0/1	c0001	2958	181	32	45	68	13	22	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0002	2958	145	12	17	108	0	8	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	1/0	c0003	2958	31	29	1	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0004	2958	5	4	1	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0005	2958	5	5	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0006	2958	4	1	0	1	0	2	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0007	2958	4	4	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0008	2958	4	0	1	0	3	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0009	2958	2	2	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0010	2958	2	0	0	0	0	2	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0011	2958	2	0	0	0	0	2	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0012	2958	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0013	2958	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0014	2958	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0015	2958	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0016	2958	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0017	2958	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0018	2958	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0019	2958	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0020	2958	1	0	1	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0021	2958	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	c0022	2958	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARSD1_chr17_42945526_42969454	0/1	c0001	1239	278	57	53	114	12	41	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	1/0	c0002	1239	32	28	3	0	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	c0003	1239	3	0	0	3	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	c0004	1239	3	0	0	3	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	c0005	1239	2	1	1	0	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	c0006	1239	1	1	0	0	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	c0007	1239	1	0	0	1	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	c0008	1239	1	0	1	0	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	c0009	1239	1	0	0	0	0	1	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	c0010	1239	1	0	0	1	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	c0011	1239	1	1	0	0	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AASDHPPT_chr11_106072662_106103695	1/1	c0001	930	392	89	66	186	12	37	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	c0002	930	8	0	0	8	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	c0003	930	2	2	0	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	c0004	930	1	1	0	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	c0005	930	1	0	0	0	0	1	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDH_chr4_56333290_56392491	1/0	c0001	3297	87	19	12	46	5	4	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0002	3297	82	16	19	40	2	5	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/1	c0003	3297	77	25	24	6	6	15	copy fasta	AASDH	chr4	56333290	56392491