Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACSBG1_chr15_78162468_78239565	0/0	c0012	2175	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0013	2175	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0014	2175	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0015	2175	1	1	0	0	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0016	2175	1	0	0	0	0	1	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0017	2175	1	1	0	0	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0018	2175	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0019	2175	1	1	0	0	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0020	2175	1	0	0	0	0	1	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0021	2175	1	0	0	0	0	1	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0022	2175	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG2_chr19_6130667_6198091	0/1	c0001	2001	121	34	25	39	8	14	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	1/0	c0002	2001	76	19	15	31	1	9	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0003	2001	11	1	2	6	0	2	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0004	2001	9	9	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0005	2001	7	0	1	6	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0006	2001	6	6	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0007	2001	6	0	3	0	3	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0008	2001	3	3	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0009	2001	2	2	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0010	2001	2	2	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0011	2001	2	2	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0012	2001	2	1	0	0	0	1	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0013	2001	2	0	0	2	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0014	2001	2	0	0	2	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0015	2001	1	0	0	0	0	1	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0016	2001	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0017	2001	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0018	2001	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0019	2001	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0020	2001	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0021	2001	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0022	2001	1	0	0	0	0	1	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0023	2001	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0024	2001	1	0	0	1	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	c0025	2001	1	0	0	1	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSF2_chr17_50421218_50479837	1/0	c0001	1848	125	13	26	61	8	16	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	c0002	1848	84	46	15	15	2	6	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/1	c0003	1848	82	6	26	33	4	12	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	c0004	1848	10	7	3	0	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	c0005	1848	8	5	3	0	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	c0006	1848	4	4	0	0	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	c0007	1848	2	0	0	2	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	c0008	1848	2	1	1	0	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	c0009	1848	1	1	0	0	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	c0010	1848	1	1	0	0	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	c0011	1848	1	0	0	1	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF3_chr16_89088852_89161233	0/0	c0001	1731	145	48	32	46	6	13	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	1/1	c0002	1731	58	6	4	35	0	11	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0003	1731	42	18	10	7	2	5	copy fasta	ACSF3	chr16	89088852	89161233