JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC97_chr19_41305172_41329873	0/0	c0003	1032	3	0	0	0	0	3	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	c0004	1032	1	1	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	c0005	1032	1	0	0	1	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	c0006	1032	1	1	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	c0007	1032	1	0	0	0	0	1	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	c0008	1032	1	1	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	c0009	1032	1	1	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC9B_chr15_40326452_40345939	1/1	c0001	1473	341	68	48	176	12	35	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0002	1473	42	7	14	6	4	11	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0003	1473	15	14	1	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0004	1473	10	1	6	0	2	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0005	1473	3	3	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0006	1473	2	0	0	2	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0007	1473	1	0	0	0	0	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0008	1473	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0009	1473	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0010	1473	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0011	1473	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0012	1473	1	0	1	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0013	1473	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0014	1473	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	c0015	1473	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9_chr19_47251525_47276953	1/0	c0001	1596	129	13	28	64	7	16	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0002	1596	112	12	21	70	3	6	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0003	1596	55	10	10	18	4	13	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0004	1593	39	4	13	13	1	8	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0005	1596	24	21	3	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0006	1596	17	17	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0007	1596	13	13	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/1	c0008	1596	3	0	0	0	1	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0009	1596	2	0	0	2	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0010	1596	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0011	1596	1	0	0	0	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0012	1596	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0013	1596	1	0	0	0	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0014	1596	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0015	1596	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0016	1596	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	c0017	1596	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCER1_chr12_90947215_90960176	1/1	c0001	1221	359	83	64	165	10	35	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0002	1221	14	13	1	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0003	1221	11	0	0	11	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0004	1200	11	0	2	9	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0005	1221	3	0	0	0	0	3	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0006	1221	1	0	0	1	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0007	1221	1	1	0	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0008	1221	1	0	0	1	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0009	1221	1	0	1	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0010	1221	1	0	0	1	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0011	1221	1	1	0	0	0	0	copy fasta	CCER1	chr12	90947215	90960176