JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCER1_chr12_90947215_90960176	0/0	c0012	1221	1	0	0	0	0	1	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	c0013	1221	1	0	0	0	0	1	copy fasta	CCER1	chr12	90947215	90960176
CCER2_chr19_38903980_38917186	1/1	c0001	801	331	83	66	134	14	32	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0002	801	108	10	12	70	4	12	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0003	801	2	0	0	0	0	2	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0004	801	1	1	0	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0005	801	1	0	1	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0006	801	1	0	1	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0007	801	1	0	0	1	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0008	801	1	0	0	1	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0009	801	1	1	0	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0010	801	1	1	0	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0011	801	1	1	0	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	c0012	801	1	1	0	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCHCR1_chr6_31137439_31162802	0/0	c0001	2616	104	14	21	52	5	12	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0002	2616	55	7	13	26	3	6	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0003	2616	37	8	0	28	0	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0004	2616	36	12	11	7	1	5	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0005	2616	30	12	1	15	1	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/1	c0006	2616	28	6	6	6	3	6	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0007	2616	27	0	1	25	0	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0008	2616	25	1	0	19	0	5	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0009	2616	22	2	8	6	2	4	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0010	2616	14	0	0	14	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0011	2616	13	1	6	1	1	4	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0012	2616	11	7	2	2	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0013	2616	9	2	5	2	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0014	2616	7	6	1	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0015	2616	5	2	3	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0016	2616	4	0	0	4	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0017	2616	3	0	0	1	1	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0018	2616	3	3	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0019	2616	2	2	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0020	2616	2	2	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0021	2616	2	2	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0022	2616	2	0	2	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0023	2616	2	0	1	0	0	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0024	2616	2	2	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0025	2616	1	0	0	1	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0026	2616	1	1	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0027	2616	1	1	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0028	2616	1	0	0	0	1	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0029	2616	1	0	0	0	0	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0030	2616	1	0	0	1	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0031	2616	1	1	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0032	2616	1	0	0	1	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0033	2616	1	0	1	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	c0034	2616	1	0	0	1	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCIN_chr9_36164388_36176334	1/1	c0001	1767	198	47	45	82	5	17	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0002	1767	159	29	22	80	3	25	copy fasta	CCIN	chr9	36164388	36176334