JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCIN_chr9_36164388_36176334	0/0	c0003	1767	29	0	0	26	3	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0004	1767	10	4	2	0	1	3	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0005	1767	7	7	0	0	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0006	1767	5	4	1	0	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0007	1767	4	0	2	0	2	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0008	1767	2	1	0	0	1	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0009	1767	2	0	0	2	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0010	1767	1	1	0	0	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0011	1767	1	1	0	0	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0012	1767	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0013	1767	1	0	0	0	0	1	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0014	1767	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0015	1767	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0016	1767	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0017	1767	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0018	1767	1	0	0	0	1	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	c0019	1767	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCKAR_chr4_26476396_26495484	1/1	c0001	1287	408	86	74	187	16	43	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0002	1287	15	0	0	15	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0003	1287	11	0	0	11	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0004	1287	3	3	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0005	1287	2	2	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0006	1287	2	2	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0007	1287	2	2	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0008	1287	2	0	0	2	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0009	1287	2	0	0	2	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0010	1287	1	1	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0011	1287	1	0	0	1	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0012	1287	1	1	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0013	1287	1	0	0	1	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0014	1287	1	0	0	0	0	1	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0015	1287	1	0	0	1	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	c0016	1287	1	1	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKBR_chr11_6254838_6277127	1/1	c0001	1344	375	83	71	161	18	40	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0002	1344	28	7	5	13	0	3	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0003	1344	6	0	0	6	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0004	1344	6	0	0	6	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0005	1344	3	0	0	3	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0006	1344	2	1	1	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0007	1344	1	0	0	0	0	1	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0008	1344	1	0	0	1	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0009	1344	1	0	0	1	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0010	1344	1	0	0	1	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0011	1344	1	0	1	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	c0012	1344	1	1	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCK_chr3_42252826_42271185	1/1	c0001	348	426	98	86	184	18	38	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	c0002	348	3	0	0	3	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	c0003	348	1	0	0	1	0	0	copy fasta	CCK	chr3	42252826	42271185
CCL11_chr17_34280742_34293334	1/1	c0001	294	373	73	70	178	14	36	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	c0002	294	65	11	9	35	2	8	copy fasta	CCL11	chr17	34280742	34293334