JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCL11_chr17_34280742_34293334	0/0	c0003	294	7	6	1	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	c0004	294	2	0	0	2	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	c0005	294	1	0	0	1	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL13_chr17_34351480_34363610	1/1	c0001	297	442	87	78	214	13	48	copy fasta	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	c0002	297	2	2	0	0	0	0	copy fasta	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	c0003	297	1	0	0	0	1	0	copy fasta	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	c0004	297	1	1	0	0	0	0	copy fasta	CCL13	chr17	34351480	34363610
CCL14_chr17_35978288_35991729	0/1	c0001	282	413	78	74	198	15	47	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	c0002	282	21	17	2	0	1	1	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	c0003	282	8	0	4	4	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	c0004	282	2	2	0	0	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	c0005	282	1	1	0	0	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL15_chr17_35992582_36006553	0/1	c0001	342	318	59	73	134	18	33	copy fasta	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	c0002	342	119	37	8	65	0	9	copy fasta	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	c0003	342	2	2	0	0	0	0	copy fasta	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	c0004	342	1	0	0	1	0	0	copy fasta	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	c0005	342	1	0	1	0	0	0	copy fasta	CCL15	chr17	35992582	36006553
CCL16_chr17_35971499_35986497	0/1	c0001	363	422	79	69	219	16	38	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	c0002	363	28	13	1	3	0	11	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	c0003	363	4	4	0	0	0	0	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	c0004	363	2	2	0	0	0	0	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	c0005	363	1	0	0	0	0	1	copy fasta	CCL16	chr17	35971499	35986497
CCL17_chr16_57399767_57421063	1/1	c0001	285	373	85	61	172	11	42	copy fasta	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	c0002	285	7	7	0	0	0	0	copy fasta	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	c0003	285	4	4	0	0	0	0	copy fasta	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	c0004	285	2	0	0	0	0	2	copy fasta	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	c0005	285	1	0	1	0	0	0	copy fasta	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	c0006	285	1	0	0	0	1	0	copy fasta	CCL17	chr16	57399767	57421063
CCL18_chr17_36059272_36077032	0/1	c0001	270	447	95	80	207	18	46	copy fasta	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	c0002	270	3	3	0	0	0	0	copy fasta	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	c0003	270	2	0	2	0	0	0	copy fasta	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	c0004	270	2	0	0	2	0	0	copy fasta	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	c0005	270	1	0	0	1	0	0	copy fasta	CCL18	chr17	36059272	36077032
CCL19_chr9_34684570_34696276	1/1	c0001	297	400	98	86	148	18	48	copy fasta	CCL19	chr9	34684570	34696276
CCL1_chr17_34355328_34368233	1/1	c0001	291	407	81	84	185	14	41	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	c0002	291	4	0	0	4	0	0	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	c0003	291	2	2	0	0	0	0	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	c0004	291	1	0	0	1	0	0	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	c0005	291	1	1	0	0	0	0	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	c0006	291	1	0	0	0	0	1	copy fasta	CCL1	chr17	34355328	34368233
CCL20_chr2_227808842_227822556	1/1	c0001	291	440	97	82	197	16	46	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	c0002	291	4	0	0	4	0	0	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	c0003	291	2	0	0	0	0	2	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	c0004	291	1	1	0	0	0	0	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	c0005	291	1	0	0	1	0	0	copy fasta	CCL20	chr2	227808842	227822556
CCL21_chr9_34704005_34715136	1/1	c0001	405	435	92	83	192	18	48	copy fasta	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	c0002	405	1	0	1	0	0	0	copy fasta	CCL21	chr9	34704005	34715136
CCL22_chr16_57353783_57371189	0/1	c0001	282	361	78	59	169	12	42	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	1/0	c0002	282	53	5	15	30	0	2	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	c0003	282	14	14	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189