JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCL22_chr16_57353783_57371189	0/0	c0004	282	7	1	4	0	0	2	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	c0005	282	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL23_chr17_36008058_36022972	0/1	c0001	414	205	9	55	109	9	22	copy fasta	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	c0002	414	205	84	18	82	3	18	copy fasta	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	c0003	414	11	1	3	5	0	2	copy fasta	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	c0004	414	1	0	0	0	1	0	copy fasta	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	c0005	414	1	0	0	0	1	0	copy fasta	CCL23	chr17	36008058	36022972
CCL24_chr7_75805825_75818806	1/1	c0001	360	229	69	44	78	11	25	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	c0002	360	162	18	28	104	0	12	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	c0003	360	12	0	4	6	1	1	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	c0004	360	1	1	0	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	c0005	360	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	c0006	360	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL25_chr19_8047760_8067650	0/0	c0001	453	214	38	37	99	9	31	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/1	c0002	453	68	22	16	25	1	3	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	1/0	c0003	453	50	1	11	35	1	1	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	c0004	453	33	1	5	18	4	5	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	c0005	453	31	13	8	7	1	2	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	c0006	453	10	3	4	0	1	2	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	c0007	453	6	6	0	0	0	0	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	c0008	453	5	0	3	0	0	2	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	c0009	453	4	1	1	0	0	2	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	c0010	453	3	3	0	0	0	0	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	c0011	453	2	0	0	0	0	2	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	c0012	453	1	0	0	0	1	0	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	c0013	453	1	0	1	0	0	0	copy fasta	CCL25	chr19	8047760	8067650
CCL26_chr7_75764538_75777211	1/1	c0001	285	420	91	66	195	18	48	copy fasta	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	c0002	285	2	2	0	0	0	0	copy fasta	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	c0003	285	1	1	0	0	0	0	copy fasta	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	c0004	285	1	0	0	1	0	0	copy fasta	CCL26	chr7	75764538	75777211
CCL27_chr9_34656890_34667657	1/1	c0001	339	339	71	70	152	10	34	copy fasta	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	c0002	339	15	10	1	0	0	4	copy fasta	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	c0003	339	15	0	4	1	4	6	copy fasta	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	c0004	339	10	9	1	0	0	0	copy fasta	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	c0005	339	2	0	0	0	0	2	copy fasta	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	c0006	339	1	0	0	1	0	0	copy fasta	CCL27	chr9	34656890	34667657
CCL28_chr5_43374193_43417391	1/1	c0001	384	321	83	60	124	12	40	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	c0002	384	3	3	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	c0003	384	2	2	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL2_chr17_34250285_34262203	0/0	c0001	300	240	67	47	101	8	17	copy fasta	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	1/1	c0002	300	194	25	35	95	8	29	copy fasta	CCL2	chr17	34250285	34262203
CCL3L3_chr17_36189869_36201758	0/0	c0001	282	88	13	26	31	4	14	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	c0002	282	34	5	1	21	2	5	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	c0003	282	19	0	8	10	0	1	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	c0004	282	16	0	0	14	0	2	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	c0005	282	1	0	1	0	0	0	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3_chr17_36083256_36095143	0/1	c0001	279	276	76	40	123	10	26	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	c0002	279	94	2	12	63	6	11	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	c0003	279	8	8	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	c0004	279	1	0	0	0	0	1	copy fasta	CCL3	chr17	36083256	36095143