JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCL3_chr17_36083256_36095143	0/0	c0005	279	1	1	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	c0006	279	1	1	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL4L2_chr17_36206063_36217873	0/0	c0001	312	72	7	19	27	5	14	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	c0002	312	26	5	10	7	1	3	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	c0003	312	16	0	2	12	0	2	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	c0004	312	12	1	2	8	0	1	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	c0005	312	11	0	0	7	0	4	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	c0006	312	10	0	0	10	0	0	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	c0007	312	4	3	1	0	0	0	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	c0008	312	3	0	0	3	0	0	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	c0009	312	1	1	0	0	0	0	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	c0010	312	1	1	0	0	0	0	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4_chr17_36098827_36110614	0/1	c0001	279	310	77	65	128	11	28	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	c0002	279	74	2	13	42	7	10	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	c0003	279	18	8	1	9	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	c0004	279	4	0	0	4	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	c0005	279	2	2	0	0	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	c0006	279	2	1	1	0	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	c0007	279	1	0	0	1	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	c0008	279	1	0	0	1	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	c0009	279	1	0	0	1	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL5_chr17_35866491_35885360	0/1	c0001	276	372	83	66	170	14	38	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	c0002	276	2	0	0	2	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	c0003	276	1	1	0	0	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL7_chr17_34265221_34277242	1/1	c0001	300	425	92	80	193	16	42	copy fasta	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	c0002	300	1	0	0	1	0	0	copy fasta	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	c0003	300	1	0	0	1	0	0	copy fasta	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	c0004	300	1	0	0	1	0	0	copy fasta	CCL7	chr17	34265221	34277242
CCL8_chr17_34314435_34326402	1/0	c0001	300	306	80	55	134	11	25	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	c0002	300	105	6	19	60	5	15	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	c0003	300	8	0	0	8	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	c0004	300	3	3	0	0	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	c0005	300	1	1	0	0	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/1	c0006	300	1	0	0	0	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCM2L_chr20_32005438_32037180	1/1	c0001	1716	246	66	60	83	13	22	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0002	1719	14	7	2	0	0	5	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0003	1716	8	1	7	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0004	1716	8	4	1	0	2	1	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0005	1716	4	4	0	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0006	1716	4	0	2	0	1	1	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0007	1716	3	0	3	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0008	1716	3	3	0	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0009	1716	2	2	0	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0010	1716	1	0	0	1	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0011	1716	1	0	1	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0012	1716	1	1	0	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0013	1716	1	0	0	0	0	1	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0014	1716	1	0	0	1	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0015	1716	1	1	0	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	c0016	1716	1	0	0	1	0	0	copy fasta	CCM2L	chr20	32005438	32037180