JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCM2L_chr20_32005438_32037180	0/0	c0017	1716	1	1	0	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2_chr7_44995201_45081453	1/0	c0001	1335	164	47	28	56	8	24	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/1	c0002	1335	77	19	19	30	3	5	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0003	1335	30	1	12	8	2	7	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0004	1335	13	1	10	2	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0005	1335	8	0	0	8	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0006	1335	7	7	0	0	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0007	1335	5	0	2	0	3	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0008	1335	5	5	0	0	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0009	1335	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0010	1335	1	0	1	0	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0011	1335	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0012	1335	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0013	1335	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0014	1335	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	c0015	1335	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCN1_chr1_85575761_85588950	1/1	c0001	1146	445	97	81	214	18	33	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	c0002	1146	6	0	5	0	0	1	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	c0003	1146	5	0	0	5	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	c0004	1146	2	0	0	0	0	2	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	c0005	1146	2	0	0	0	0	2	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	c0006	1146	2	0	0	0	0	2	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	c0007	1146	2	0	0	2	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	c0008	1146	1	0	0	1	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	c0009	1146	1	1	0	0	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN2_chr6_131943176_131956372	0/1	c0001	1050	443	95	77	209	16	45	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	1/0	c0002	1050	1	0	0	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	c0003	1050	1	0	0	1	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	c0004	1050	1	1	0	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	c0005	1050	1	0	1	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	c0006	1050	1	0	0	0	0	1	copy fasta	CCN2	chr6	131943176	131956372
CCN3_chr8_119411446_119429434	1/1	c0001	1074	215	35	48	108	4	18	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	c0002	1074	123	50	17	40	4	12	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	c0003	1074	6	3	1	0	0	2	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	c0004	1074	4	0	0	4	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	c0005	1074	1	1	0	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	c0006	1074	1	1	0	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	c0007	1074	1	0	1	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	c0008	1074	1	0	1	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN4_chr8_133186039_133236690	1/0	c0001	1104	274	51	42	141	9	30	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/1	c0002	1104	71	19	21	13	7	10	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0003	1104	9	9	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0004	1104	8	5	1	0	2	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0005	1104	8	0	0	8	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0006	1104	5	0	4	0	0	1	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0007	1104	2	0	2	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0008	1104	2	2	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0009	1104	2	2	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0010	1104	2	2	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0011	1104	2	0	0	2	0	0	copy fasta	CCN4	chr8	133186039	133236690