JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCN4_chr8_133186039_133236690	0/0	c0012	1104	2	2	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0013	1104	1	0	0	0	0	1	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0014	1104	1	0	1	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0015	1104	1	0	0	1	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0016	1104	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0017	1104	1	0	1	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0018	1104	1	0	0	1	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0019	1104	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0020	1104	1	0	0	1	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	c0021	1104	1	0	0	1	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN5_chr20_44710369_44732811	1/0	c0001	753	267	44	42	136	9	35	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/1	c0002	753	155	31	39	66	7	11	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0003	753	6	6	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0004	753	3	3	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0005	753	3	3	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0006	753	3	3	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0007	753	2	1	1	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0008	753	1	1	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0009	753	1	1	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0010	717	1	0	0	0	0	1	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0011	753	1	1	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0012	753	1	0	0	0	0	1	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0013	753	1	0	0	1	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	c0014	753	1	0	0	1	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN6_chr6_112049104_112074686	1/1	c0001	1065	300	42	53	157	9	37	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0002	1065	91	13	16	50	3	9	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0003	1065	10	10	0	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0004	1065	9	1	6	0	2	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0005	1065	5	5	0	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0006	1065	4	3	1	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0007	1065	3	3	0	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0008	1065	3	3	0	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0009	1065	2	2	0	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0010	1065	1	0	0	1	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0011	1065	1	1	0	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	c0012	1065	1	1	0	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCNA1_chr13_36427495_36447870	1/1	c0001	1266	421	86	74	199	18	42	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	c0002	1266	10	9	1	0	0	0	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	c0003	1266	4	0	0	4	0	0	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	c0004	1266	1	0	0	0	0	1	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	c0005	1266	1	1	0	0	0	0	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	c0006	1266	1	0	0	1	0	0	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	c0007	1266	1	0	0	0	0	1	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	c0008	1266	1	0	1	0	0	0	copy fasta	CCNA1	chr13	36427495	36447870
CCNA2_chr4_121811444_121828883	0/1	c0001	1299	343	50	67	167	17	41	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	c0002	1299	44	34	9	1	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	1/0	c0003	1299	15	0	0	11	1	2	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	c0004	1299	3	3	0	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	c0005	1299	2	0	0	2	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	c0006	1299	2	0	0	2	0	0	copy fasta	CCNA2	chr4	121811444	121828883