JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCNA2_chr4_121811444_121828883	0/0	c0007	1299	1	0	1	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	c0008	1299	1	0	0	0	0	1	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	c0009	1299	1	1	0	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	c0010	1299	1	0	1	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	c0011	1299	1	0	0	1	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNB1IP1_chr14_20306370_20338279	1/1	c0001	834	347	74	65	154	13	39	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	c0002	834	57	16	6	30	1	4	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	c0003	834	6	0	0	6	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	c0004	834	2	2	0	0	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	c0005	834	1	0	0	1	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	c0006	834	1	0	0	1	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	c0007	834	1	1	0	0	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	c0008	834	1	0	0	0	0	1	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	c0009	834	1	1	0	0	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	c0010	834	1	0	1	0	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1_chr5_69162150_69183245	1/0	c0001	1302	360	59	66	183	9	42	copy fasta	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/1	c0002	1302	58	30	14	9	1	3	copy fasta	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	c0003	1302	1	0	0	0	0	1	copy fasta	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	c0004	1302	1	1	0	0	0	0	copy fasta	CCNB1	chr5	69162150	69183245
CCNB2_chr15_59100146_59130045	1/1	c0001	1197	352	75	65	151	18	41	copy fasta	CCNB2	chr15	59100146	59130045
CCNB2_chr15_59100146_59130045	0/0	c0002	1197	26	10	3	12	0	1	copy fasta	CCNB2	chr15	59100146	59130045
CCNB2_chr15_59100146_59130045	0/0	c0003	1197	4	4	0	0	0	0	copy fasta	CCNB2	chr15	59100146	59130045
CCNB2_chr15_59100146_59130045	0/0	c0004	1197	3	0	0	3	0	0	copy fasta	CCNB2	chr15	59100146	59130045
CCNB2_chr15_59100146_59130045	0/0	c0005	1197	2	2	0	0	0	0	copy fasta	CCNB2	chr15	59100146	59130045
CCNB2_chr15_59100146_59130045	0/0	c0006	1197	1	1	0	0	0	0	copy fasta	CCNB2	chr15	59100146	59130045
CCNC_chr6_99537387_99573660	1/1	c0001	852	408	84	78	182	14	48	copy fasta	CCNC	chr6	99537387	99573660
CCNC_chr6_99537387_99573660	0/0	c0002	852	2	0	0	2	0	0	copy fasta	CCNC	chr6	99537387	99573660
CCND1_chr11_69636156_69659474	1/1	c0001	888	212	56	50	71	9	24	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	c0002	888	162	15	30	92	9	16	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	c0003	888	33	23	2	5	0	3	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	c0004	888	3	0	0	3	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	c0005	888	1	0	0	1	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	c0006	888	1	0	0	0	0	1	copy fasta	CCND1	chr11	69636156	69659474
CCND2_chr12_4268762_4310353	1/0	c0001	870	361	77	68	169	7	39	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/1	c0002	870	99	23	16	45	5	9	copy fasta	CCND2	chr12	4268762	4310353
CCND3_chr6_41929952_41946808	0/0	c0001	879	220	64	29	102	9	16	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	1/1	c0002	879	196	16	32	109	6	31	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	c0003	879	32	14	17	0	0	1	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	c0004	879	5	4	1	0	0	0	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	c0005	879	2	0	1	0	1	0	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	c0006	879	1	0	0	1	0	0	copy fasta	CCND3	chr6	41929952	41946808
CCNDBP1_chr15_43180403_43202177	1/1	c0001	1083	346	74	58	169	7	36	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	c0002	1083	4	0	0	4	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	c0003	1083	2	0	0	2	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	c0004	1083	2	2	0	0	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	c0005	1083	2	2	0	0	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	c0006	1083	1	0	0	0	1	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	c0007	1083	1	0	0	1	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNE1_chr19_29806991_29829312	1/0	c0001	1233	358	93	51	172	6	35	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/1	c0002	1233	53	3	16	16	7	10	copy fasta	CCNE1	chr19	29806991	29829312