JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCNE1_chr19_29806991_29829312	0/0	c0003	1233	6	0	5	0	0	1	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	c0004	1233	4	1	0	0	3	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	c0005	1233	1	1	0	0	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	c0006	1233	1	0	0	1	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	c0007	1233	1	0	0	1	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	c0008	1233	1	0	1	0	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	c0009	1233	1	0	1	0	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE2_chr8_94875224_94900201	1/1	c0001	1215	343	85	57	151	10	38	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	c0002	1215	4	0	4	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	c0003	1215	2	1	1	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	c0004	1215	1	0	0	1	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	c0005	1215	1	1	0	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	c0006	1215	1	1	0	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNF_chr16_2424447_2463854	1/1	c0001	2361	264	81	56	75	12	38	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	c0002	2361	4	4	0	0	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	c0003	2361	3	0	0	3	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	c0004	2361	2	0	0	0	0	2	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	c0005	2361	1	0	0	1	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	c0006	2361	1	1	0	0	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	c0007	2361	1	0	0	1	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNG1_chr5_163432595_163450016	1/1	c0001	888	410	96	72	195	7	38	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	c0002	888	6	0	2	0	1	3	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	c0003	888	3	0	2	0	0	1	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	c0004	888	1	0	0	1	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	c0005	888	1	0	0	1	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	c0006	888	1	0	0	1	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG2_chr4_77152207_77175060	1/1	c0001	1035	390	78	70	182	15	43	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	c0002	1035	18	10	3	5	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	c0003	1035	6	1	2	0	2	1	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	c0004	1035	3	0	1	0	0	2	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	c0005	1035	3	3	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	c0006	1035	2	2	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	c0007	1035	2	0	0	2	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	c0008	1035	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	c0009	1035	1	0	0	0	1	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	c0010	1035	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	c0011	1035	1	0	0	1	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNH_chr5_87389274_87417930	1/0	c0001	972	290	63	49	140	8	29	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/1	c0002	972	35	3	10	13	3	5	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	c0003	972	9	8	1	0	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	c0004	972	7	7	0	0	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	c0005	972	6	0	0	6	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	c0006	972	2	0	0	0	1	1	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	c0007	972	1	1	0	0	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	c0008	972	1	0	0	1	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	c0009	972	1	0	0	0	0	1	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	c0010	972	1	0	0	1	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	c0011	972	1	0	0	1	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNI2_chr5_132742426_132759403	0/0	c0001	1110	211	65	22	116	2	6	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	1/1	c0002	1110	122	8	33	47	8	24	copy fasta	CCNI2	chr5	132742426	132759403