Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACSF3_chr16_89088852_89161233	0/0	c0004	1731	34	0	0	30	0	4	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0005	1731	30	6	18	3	3	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0006	1731	16	1	0	12	0	3	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0007	1731	9	0	2	7	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0008	1731	6	2	0	2	1	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0009	1731	5	2	1	0	1	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0010	1731	4	0	1	2	0	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0011	1731	3	0	0	0	2	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0012	1731	3	0	0	3	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0013	1731	2	0	0	2	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0014	1731	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0015	1731	1	0	0	0	0	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0016	1731	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0017	1731	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0018	1731	1	0	0	0	1	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0019	1731	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0020	1731	1	0	0	0	0	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0021	1731	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0022	1731	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0023	1731	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	c0024	1731	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSL1_chr4_184750595_184830968	0/0	c0001	2097	241	68	36	106	10	21	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/1	c0002	2097	73	18	10	34	2	8	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	c0003	2097	42	3	13	14	2	10	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	c0004	2097	12	0	7	5	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	1/0	c0005	2097	9	4	0	2	0	2	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	c0006	2097	5	0	0	5	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	c0007	2097	3	2	1	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	c0008	2097	2	0	2	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	c0009	2097	2	0	2	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	c0010	2097	1	0	0	0	0	1	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	c0011	2097	1	0	1	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	c0012	2097	1	1	0	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL3_chr2_222856036_222949639	1/1	c0001	2163	240	83	51	70	13	21	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	c0002	2163	8	1	3	0	1	3	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	c0003	2163	1	0	1	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	c0004	2163	1	1	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	c0005	2163	1	1	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	c0006	2163	1	0	1	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL4_chrX_109636335_109738257	1/1	c0001	2013	219	58	42	79	11	27	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	c0002	2013	1	0	0	1	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	c0003	2013	1	0	0	0	0	1	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	c0004	2013	1	0	1	0	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL5_chr10_112369116_112433376	1/1	c0001	2052	319	82	56	128	9	42	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	c0002	2052	27	1	5	19	2	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	c0003	2052	4	4	0	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	c0004	2052	4	4	0	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	c0005	2052	2	0	1	0	1	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	c0006	2052	2	1	1	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	c0007	2052	1	1	0	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376