JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCNI2_chr5_132742426_132759403	0/0	c0003	1110	8	7	1	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0004	1110	5	4	1	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0005	1110	4	4	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0006	1110	2	0	0	2	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0007	1110	2	2	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0008	1110	2	2	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0009	1110	1	0	0	1	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0010	1110	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0011	1110	1	0	0	1	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0012	1110	1	0	0	1	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0013	1110	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	c0014	1110	1	0	1	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI_chr4_77042155_77080989	1/1	c0001	1134	364	69	67	168	14	44	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	c0002	1134	20	20	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	c0003	1134	3	3	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	c0004	1134	1	0	1	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNJL_chr5_160244083_160317564	1/1	c0001	1164	266	56	62	109	12	25	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	c0002	1164	43	6	1	29	0	7	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	c0003	1164	17	13	4	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	c0004	1164	6	4	2	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	c0005	1164	2	1	1	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	c0006	1164	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	c0007	1164	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	c0008	1164	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	c0009	1164	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJ_chr10_96038583_96065870	1/1	c0001	1152	338	90	75	121	16	34	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	c0002	1152	78	3	1	65	0	9	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	c0003	1152	1	1	0	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	c0004	1152	1	0	0	0	0	1	copy fasta	CCNJ	chr10	96038583	96065870
CCNK_chr14_99476409_99517440	1/1	c0001	1743	316	84	55	123	16	36	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	c0002	1743	6	0	0	6	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	c0003	1743	1	0	1	0	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	c0004	1743	1	0	0	1	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	c0005	1743	1	0	0	1	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	c0006	1743	1	0	0	1	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNL1_chr3_157142553_157165147	1/1	c0001	1581	388	81	66	179	17	43	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	c0002	1581	25	6	4	13	1	1	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	c0003	1581	11	9	2	0	0	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	c0004	1581	1	1	0	0	0	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	c0005	1569	1	1	0	0	0	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL2_chr1_1380711_1404335	1/1	c0001	1563	339	90	61	129	15	42	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	c0002	1563	10	0	0	10	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	c0003	1563	6	0	3	0	1	2	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	c0004	1563	3	0	0	3	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	c0005	1563	3	0	2	0	0	1	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	c0006	1563	2	0	2	0	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	c0007	1563	2	0	0	2	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	c0008	1563	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	c0009	1563	1	0	0	0	0	1	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	c0010	1563	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335