JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCNL2_chr1_1380711_1404335	0/0	c0011	1563	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	c0012	1563	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNO_chr5_55226152_55238608	1/1	c0001	1053	377	80	71	169	11	44	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	c0002	1053	3	3	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	c0003	1053	1	0	0	0	1	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	c0004	1053	1	0	1	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	c0005	1053	1	1	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	c0006	1053	1	1	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	c0007	1053	1	1	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	c0008	1053	1	1	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	c0009	1053	1	1	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	c0010	1053	1	0	0	1	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNP_chr19_40217208_40231689	1/1	c0001	924	401	96	74	179	18	32	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	c0002	924	4	0	0	4	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	c0003	924	2	0	0	2	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	c0004	924	1	0	0	0	0	1	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	c0005	924	1	1	0	0	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	c0006	924	1	0	0	0	0	1	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	c0007	924	1	1	0	0	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	c0008	924	1	0	0	1	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	c0009	924	1	1	0	0	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	c0010	924	1	1	0	0	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNQ_chrX_153582925_153604139	1/1	c0001	747	295	75	46	134	7	31	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	c0002	747	1	1	0	0	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	c0003	749	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	c0004	747	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	c0005	747	1	0	0	0	0	1	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	c0006	747	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	c0007	746	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	c0008	749	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNT1_chr12_48683458_48721707	0/0	c0001	2181	203	33	32	119	5	14	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	1/1	c0002	2181	145	50	27	47	4	15	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	c0003	2181	28	8	8	0	5	7	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	c0004	2181	3	2	1	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	c0005	2181	2	0	0	2	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	c0006	2181	2	0	2	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	c0007	2181	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	c0008	2181	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	c0009	2181	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT2_chr2_134913822_134964342	0/1	c0001	2193	295	45	48	163	4	34	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	1/0	c0002	2193	83	18	23	28	6	7	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	c0003	2193	14	14	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	c0004	2193	6	6	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	c0005	2193	2	0	0	2	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	c0006	2193	1	0	0	1	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	c0007	2193	1	0	1	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	c0008	2193	1	0	0	0	0	1	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	c0009	2193	1	1	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNYL1_chr2_207706640_207761174	1/1	c0001	1080	345	85	63	146	14	35	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	c0002	1080	4	0	1	0	0	3	copy fasta	CCNYL1	chr2	207706640	207761174