JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCNYL1_chr2_207706640_207761174	0/0	c0003	1080	2	0	0	2	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	c0004	1080	2	2	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	c0005	1080	1	1	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNY_chr10_35331509_35577667	0/0	c0001	1026	155	64	29	45	3	14	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	1/1	c0002	1026	123	19	22	59	3	18	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	c0003	1026	13	0	0	13	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	c0004	1026	3	3	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	c0005	1026	1	0	1	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	c0006	1026	1	0	0	1	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCP110_chr16_19518942_19558408	0/0	c0001	2976	91	14	10	63	1	3	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0002	2976	67	8	14	36	1	8	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0003	2976	54	16	15	11	3	9	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0004	2976	30	0	7	20	1	2	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0005	2976	27	19	7	0	1	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	1/0	c0006	2976	24	6	4	6	0	7	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/1	c0007	2976	24	0	3	14	0	6	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0008	2976	22	0	0	22	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0009	2976	11	11	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0010	2976	9	7	2	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0011	2976	8	8	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0012	2976	6	0	0	6	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0013	2976	4	0	3	0	1	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0014	2976	1	0	0	0	0	1	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0015	2976	1	0	0	1	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0016	2976	1	0	0	0	0	1	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0017	2976	1	0	0	0	0	1	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0018	2976	1	1	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0019	2976	1	0	0	1	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0020	2976	1	0	1	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0021	2976	1	1	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	c0022	2976	1	1	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCPG1_chr15_55350239_55413359	1/0	c0001	2424	163	24	33	74	10	21	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0002	2424	102	8	22	55	3	14	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0003	2424	40	38	2	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0004	2424	20	6	3	8	2	1	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0005	2424	9	0	4	0	1	4	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0006	2424	7	7	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0007	2424	5	5	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0008	2424	3	0	0	2	0	1	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0009	2424	1	1	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0010	2424	1	0	0	1	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0011	2424	1	1	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	c0012	2424	1	0	0	0	0	1	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/1	c0013	2424	1	0	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCR10_chr17_42673889_42686843	1/1	c0001	1089	344	72	72	149	10	39	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	c0002	1089	7	6	1	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	c0003	1089	5	5	0	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	c0004	1089	3	0	0	3	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	c0005	1089	2	1	1	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	c0006	1089	2	0	2	0	0	0	copy fasta	CCR10	chr17	42673889	42686843