JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCR10_chr17_42673889_42686843	0/0	c0007	1089	1	1	0	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	c0008	1089	1	0	0	0	0	1	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	c0009	1089	1	1	0	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR1_chr3_46196711_46213313	1/1	c0001	1068	337	71	66	152	11	35	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	c0002	1068	11	10	1	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	c0003	1068	4	4	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	c0004	1068	3	0	2	0	0	1	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	c0005	1068	1	0	1	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	c0006	1068	1	0	0	1	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	c0007	1068	1	0	0	0	1	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	c0008	1068	1	0	0	1	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	c0009	1068	1	1	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR2_chr3_46349111_46365940	1/1	c0001	1083	192	49	22	91	7	21	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	c0002	1083	131	31	17	65	4	14	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	c0003	1083	101	10	24	57	1	9	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	c0004	1083	12	0	10	0	2	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	c0005	1083	1	0	1	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	c0006	1083	1	0	0	1	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR3_chr3_46237460_46271706	1/1	c0001	1068	370	76	67	184	13	28	copy fasta	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	c0002	1068	33	9	5	10	0	9	copy fasta	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	c0003	1068	2	0	2	0	0	0	copy fasta	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	c0004	1068	2	1	0	0	1	0	copy fasta	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	c0005	1068	1	0	0	0	0	1	copy fasta	CCR3	chr3	46237460	46271706
CCR4_chr3_32946644_32961349	1/0	c0001	1083	340	81	63	159	9	27	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/1	c0002	1083	43	4	15	11	3	9	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	c0003	1083	2	0	0	2	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	c0004	1083	1	0	0	0	0	1	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	c0005	1083	1	1	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	c0006	1083	1	0	0	0	0	1	copy fasta	CCR4	chr3	32946644	32961349
CCR5_chr3_46365946_46381206	1/1	c0001	1059	387	82	69	180	12	42	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0002	1059	18	0	0	18	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0003	1059	5	4	1	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0004	1027	4	0	2	0	2	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0005	1059	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0006	1059	1	1	0	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0007	1059	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0008	1059	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0009	1059	1	1	0	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0010	1059	1	0	1	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0011	1059	1	0	1	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	c0012	1059	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR6_chr6_167118096_167144141	1/1	c0001	1125	209	56	29	98	6	18	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0002	1125	195	18	38	109	9	21	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0003	1125	44	15	6	18	1	4	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0004	1125	2	0	1	0	1	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0005	1125	2	2	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0006	1125	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0007	1125	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0008	1125	1	0	0	0	0	1	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0009	1125	1	0	0	0	0	1	copy fasta	CCR6	chr6	167118096	167144141