JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCR6_chr6_167118096_167144141	0/0	c0010	1125	1	0	0	0	0	1	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0011	1125	1	0	0	0	1	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0012	1125	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	c0013	1125	1	1	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR7_chr17_40548769_40570472	1/1	c0001	1137	370	72	69	170	18	39	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	c0002	1137	29	17	3	9	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	c0003	1137	6	6	0	0	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	c0004	1137	1	1	0	0	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	c0005	1137	1	0	0	1	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	c0006	1137	1	0	0	0	0	1	copy fasta	CCR7	chr17	40548769	40570472
CCR8_chr3_39324709_39338680	1/1	c0001	1068	354	89	56	165	8	34	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	c0002	1068	39	4	17	0	8	10	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	c0003	1068	1	0	0	1	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	c0004	1068	1	0	0	1	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	c0005	1068	1	0	0	1	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	c0006	1068	1	0	1	0	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	c0007	1068	1	1	0	0	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR9_chr3_45881543_45908174	1/1	c0001	1110	395	78	71	196	14	34	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0002	1110	11	3	1	7	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0003	1110	5	5	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0004	1110	3	0	0	3	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0005	1110	2	2	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0006	1110	2	2	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0007	1110	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0008	1110	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0009	1110	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0010	1110	1	1	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0011	1110	1	1	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	c0012	1110	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCRL2_chr3_46402259_46414523	1/1	c0001	1035	204	37	39	106	5	15	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0002	1035	130	5	22	80	5	18	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0003	1035	26	13	9	0	4	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0004	1035	21	20	1	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0005	1035	19	0	5	4	0	10	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0006	1035	4	4	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0007	1035	3	3	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0008	1035	2	0	0	2	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0009	1035	2	2	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0010	1035	1	0	0	0	0	1	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0011	1035	1	1	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0012	1035	1	1	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0013	1035	1	1	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	c0014	1035	1	1	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCSAP_chr1_229316015_229348047	1/0	c0001	813	267	73	47	107	7	32	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/1	c0002	813	165	19	36	88	7	14	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	c0003	813	1	0	0	1	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	c0004	798	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	c0005	813	1	0	1	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	c0006	813	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSER1_chr4_90122394_91610295	0/0	c0001	2703	22	14	5	0	0	3	copy fasta	CCSER1	chr4	90122394	91610295