JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCSER1_chr4_90122394_91610295	0/0	c0002	2703	6	5	0	0	0	1	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	c0003	2703	3	3	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	c0004	2703	2	2	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	c0005	2703	2	2	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	c0006	2703	1	1	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	c0007	2703	1	0	1	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	c0008	2703	1	1	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER2_chr10_84323589_84523517	1/1	c0001	3144	230	51	48	97	7	25	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0002	3144	85	6	19	48	2	10	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0003	3144	16	2	2	12	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0004	3144	15	14	1	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0005	3144	5	0	0	5	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0006	3144	3	2	1	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0007	3144	3	0	0	0	1	2	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0008	3144	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0009	3144	1	0	0	1	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0010	3144	1	0	1	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0011	3144	1	0	1	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0012	3144	1	0	0	1	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0013	3144	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0014	3144	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0015	3144	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0016	3144	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0017	3144	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0018	3144	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0019	3144	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	c0020	3144	1	0	1	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCS_chr11_66588185_66611019	1/1	c0001	825	375	80	59	183	15	36	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	c0002	825	19	3	5	1	1	9	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	c0003	825	2	2	0	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	c0004	825	2	0	2	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	c0005	825	1	1	0	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	c0006	825	1	0	0	1	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	c0007	825	1	0	0	1	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	c0008	825	1	0	0	0	0	1	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	c0009	825	1	1	0	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	c0010	825	1	1	0	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCT2_chr12_69580459_69606570	1/1	c0001	1608	319	88	50	148	10	21	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	c0002	1608	86	10	19	45	4	8	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	c0003	1608	1	0	0	0	0	1	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	c0004	1608	1	0	1	0	0	0	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	c0005	1608	1	0	0	1	0	0	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	c0006	1608	1	0	0	1	0	0	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	c0007	1608	1	0	0	1	0	0	copy fasta	CCT2	chr12	69580459	69606570
CCT3_chr1_156303968_156343292	1/1	c0001	1638	338	85	70	136	12	33	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	c0002	1638	46	0	3	39	0	4	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	c0003	1638	5	0	1	0	2	2	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	c0004	1638	1	1	0	0	0	0	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	c0005	1638	1	0	0	1	0	0	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	c0006	1638	1	0	0	0	0	1	copy fasta	CCT3	chr1	156303968	156343292