JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCT4_chr2_61863085_61893656	1/0	c0001	1620	352	63	67	174	14	33	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/1	c0002	1620	53	24	8	6	4	10	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	c0003	1620	2	0	0	2	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	c0004	1620	1	0	0	0	0	1	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	c0005	1620	1	0	1	0	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	c0006	1620	1	1	0	0	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	c0007	1620	1	0	0	1	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	c0008	1620	1	0	0	1	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	c0009	1620	1	0	0	1	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	c0010	1620	1	0	0	1	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT5_chr5_10245280_10271389	0/1	c0001	1626	237	35	42	120	15	24	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	1/0	c0002	1626	107	43	22	25	1	15	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0003	1626	7	0	4	1	0	2	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0004	1626	5	5	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0005	1626	2	2	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0006	1626	2	2	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0007	1626	2	0	1	1	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0008	1626	2	0	0	2	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0009	1626	2	0	2	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0010	1626	2	1	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0011	1626	1	1	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0012	1626	1	1	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0013	1626	1	0	0	1	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0014	1626	1	0	0	1	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0015	1626	1	0	0	0	0	1	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	c0016	1626	1	0	0	1	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT6A_chr7_56046765_56068989	0/1	c0001	1596	215	26	49	106	12	21	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	1/0	c0002	1596	134	33	24	61	3	12	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0003	1596	31	23	3	0	1	4	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0004	1596	27	8	2	17	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0005	1596	9	1	0	8	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0006	1596	5	0	0	5	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0007	1596	1	0	0	0	0	1	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0008	1596	1	1	0	0	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0009	1596	1	0	0	1	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0010	1596	1	0	0	0	0	1	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0011	1564	1	0	0	1	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0012	1596	1	0	0	0	0	1	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	c0013	1596	1	0	0	1	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6B_chr17_34922861_34966460	1/1	c0001	1593	171	59	38	44	7	21	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	c0002	1593	132	14	21	86	2	9	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	c0003	1593	81	15	8	43	5	10	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	c0004	1593	7	2	0	5	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	c0005	1593	3	0	1	0	2	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	c0006	1593	2	0	0	2	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	c0007	1593	1	1	0	0	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	c0008	1593	1	0	1	0	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	c0009	1593	1	0	0	0	0	1	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	c0010	1593	1	0	1	0	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	c0011	1593	1	0	0	0	0	1	copy fasta	CCT6B	chr17	34922861	34966460