JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCT6B_chr17_34922861_34966460	0/0	c0012	1593	1	1	0	0	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT7_chr2_73229308_73258005	1/1	c0001	1632	218	58	40	83	12	23	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0002	1632	113	12	25	63	3	10	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0003	1632	24	19	1	0	3	1	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0004	1632	6	0	0	6	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0005	1632	4	3	1	0	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0006	1632	3	0	0	3	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0007	1632	2	1	1	0	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0008	1632	1	0	0	1	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0009	1632	1	1	0	0	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0010	1632	1	0	0	1	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0011	1632	1	1	0	0	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0012	1632	1	1	0	0	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0013	1632	1	0	0	1	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0014	1632	1	1	0	0	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	c0015	1632	1	1	0	0	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT8L2_chr22_16585751_16597810	0/1	c0001	1674	325	80	56	139	10	39	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	1/0	c0002	1674	84	6	15	55	2	5	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0003	1674	3	0	1	2	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0004	1674	3	2	1	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0005	1674	3	3	0	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0006	1674	2	0	0	2	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0007	1674	2	0	2	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0008	1674	1	1	0	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0009	1674	1	0	1	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0010	1674	1	0	0	1	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0011	1674	1	0	1	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0012	1674	1	1	0	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0013	1674	1	0	1	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0014	1674	1	0	0	1	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0015	1674	1	0	0	1	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0016	1674	1	0	0	1	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	c0017	1674	1	1	0	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8_chr21_29051326_29078648	1/1	c0001	1647	394	76	68	196	12	40	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	c0002	1647	13	13	0	0	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	c0003	1647	9	7	2	0	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	c0004	1647	2	0	2	0	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	c0005	1647	2	0	0	2	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	c0006	1647	1	0	0	1	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	c0007	1647	1	0	0	0	0	1	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	c0008	1647	1	0	0	1	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	c0009	1647	1	0	0	0	0	1	copy fasta	CCT8	chr21	29051326	29078648
CCZ1B_chr7_6793937_6831275	0/0	c0001	1449	126	22	23	66	2	13	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	c0002	1449	120	26	24	58	7	5	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	c0003	1449	86	2	19	46	3	16	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	c0004	1449	9	8	0	1	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	c0005	1449	4	0	1	0	2	1	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	c0006	1449	2	2	0	0	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	c0007	1449	2	1	1	0	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	c0008	1449	1	0	0	1	0	0	copy fasta	CCZ1B	chr7	6793937	6831275