JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCZ1B_chr7_6793937_6831275	0/0	c0009	1449	1	1	0	0	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	c0010	1449	1	0	0	0	0	1	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	c0011	1449	1	0	0	1	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	c0012	1449	1	0	0	1	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1_chr7_5893733_5931550	0/0	c0001	1449	45	13	12	13	3	4	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	c0002	1449	31	18	6	2	4	1	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	c0003	1449	16	8	5	1	1	1	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	c0004	1449	7	0	5	1	0	1	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	c0005	1449	6	0	5	1	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	c0006	1449	3	2	1	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	c0007	1449	2	2	0	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	c0008	1449	1	1	0	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	c0009	1449	1	0	0	1	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	c0010	1449	1	0	0	0	0	1	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	c0011	1449	1	0	0	1	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CD101_chr1_116996760_117041552	0/0	c0001	3066	105	46	18	31	3	7	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0002	3066	75	1	20	38	3	13	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0003	3066	75	4	3	61	0	7	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/1	c0004	3066	51	6	19	13	6	6	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	1/0	c0005	3066	34	2	3	25	1	2	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0006	3066	14	0	0	14	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0007	3066	10	4	4	0	1	1	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0008	3066	5	5	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0009	3066	5	0	4	0	1	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0010	3066	4	4	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0011	3066	4	4	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0012	3066	3	0	2	0	1	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0013	3066	2	2	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0014	3066	2	1	1	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0015	3066	2	2	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0016	3066	2	0	0	0	0	2	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0017	3066	2	0	0	2	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0018	3066	2	0	0	0	0	2	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0019	3066	2	2	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0020	3066	2	0	0	0	0	2	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0021	3066	2	2	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0022	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0023	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0024	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0025	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0026	3066	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0027	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0028	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0029	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0030	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0031	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0032	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0033	3066	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0034	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0035	3066	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552