JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD101_chr1_116996760_117041552	0/0	c0036	3066	1	0	0	0	0	1	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0037	3066	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0038	3066	1	0	0	0	0	1	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0039	3066	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0040	3066	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0041	3033	1	0	0	0	0	1	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0042	3066	1	0	0	0	0	1	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0043	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	c0044	3066	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD109_chr6_73691203_73833313	0/1	c0001	4338	97	13	18	59	3	3	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0002	4338	45	0	7	35	0	3	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0003	4338	37	3	13	11	5	5	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0004	4338	33	17	2	9	0	5	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0005	4338	28	4	4	14	2	4	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0006	4338	25	5	2	13	2	3	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0007	4338	10	5	1	4	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0008	4338	9	2	0	7	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0009	4338	9	0	0	7	0	2	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0010	4338	8	0	3	4	0	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0011	4338	8	8	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0012	4338	6	6	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	1/0	c0013	4338	4	1	2	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0014	4338	2	0	0	0	1	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0015	4338	2	0	1	0	1	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0016	4338	2	0	0	0	2	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0017	4338	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0018	4338	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0019	4338	2	0	1	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0020	4338	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0021	4338	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0022	4338	1	0	0	0	0	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0023	4338	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0024	4338	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0025	4338	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0026	4338	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0027	4338	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0028	4338	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0029	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0030	4338	1	0	0	0	0	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0031	4338	1	0	1	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0032	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0033	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0034	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0035	4338	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0036	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0037	4338	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0038	4338	1	0	0	0	0	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0039	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0040	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0041	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313