Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACSL5_chr10_112369116_112433376	0/0	c0008	2052	1	1	0	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	c0009	2052	1	0	1	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	c0010	2052	1	0	0	0	0	1	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	c0011	2052	1	0	0	0	0	1	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	c0012	2052	1	0	0	1	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL6_chr5_131944973_132016658	1/1	c0001	2169	314	77	66	134	12	23	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	c0002	2169	2	0	0	2	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	c0003	2169	2	2	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	c0004	2169	1	1	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	c0005	2146	1	0	0	1	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	c0006	2169	1	0	0	1	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	c0007	2169	1	0	1	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	c0008	2169	1	1	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	c0009	2169	1	1	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	c0010	2169	1	0	1	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	c0011	2169	1	0	0	0	0	1	copy fasta	ACSL6	chr5	131944973	132016658
ACSM1_chr16_20618235_20702680	0/0	c0001	1734	122	42	11	52	2	15	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	1/1	c0002	1734	94	23	27	16	8	18	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0003	1734	67	0	6	53	3	5	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0004	1734	9	9	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0005	1734	7	7	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0006	1734	3	0	2	0	1	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0007	1734	3	3	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0008	1734	2	0	0	0	0	2	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0009	1734	2	2	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0010	1734	2	1	1	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0011	1734	1	1	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0012	1734	1	0	1	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0013	1734	1	1	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0014	1734	1	1	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0015	1734	1	0	0	1	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0016	1734	1	0	0	1	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	c0017	1734	1	0	0	1	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM2A_chr16_20446521_20492669	0/0	c0001	1734	107	17	49	20	8	13	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0002	1734	89	0	8	67	4	10	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/1	c0003	1734	61	35	5	13	1	6	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0004	1734	49	6	6	31	1	5	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	1/0	c0005	1734	34	1	4	22	2	4	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0006	1734	32	0	0	31	0	1	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0007	1734	12	9	3	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0008	1734	8	2	3	3	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0009	1734	7	7	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0010	1734	6	6	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0011	1734	4	4	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0012	1734	4	0	0	0	0	4	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0013	1734	2	0	0	2	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0014	1734	2	2	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0015	1734	2	2	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0016	1734	2	0	0	2	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0017	1734	2	2	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669