JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD109_chr6_73691203_73833313	0/0	c0042	4338	1	0	1	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0043	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0044	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0045	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0046	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0047	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	c0048	4338	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD14_chr5_140626732_140638175	1/1	c0001	1128	356	86	57	156	15	40	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0002	1128	27	9	5	7	3	3	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0003	1128	9	0	0	9	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0004	1128	8	0	0	8	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0005	1128	2	0	0	2	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0006	1128	2	0	0	2	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0007	1128	1	0	0	0	0	1	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0008	1128	1	0	0	0	0	1	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0009	1128	1	0	0	1	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0010	1128	1	0	0	1	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0011	1128	1	1	0	0	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	c0012	1128	1	0	0	0	0	1	copy fasta	CD14	chr5	140626732	140638175
CD151_chr11_827952_843831	0/0	c0001	762	331	57	67	174	12	21	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	1/1	c0002	762	109	37	16	21	6	27	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	c0003	762	3	2	1	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	c0004	762	1	0	0	1	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	c0005	762	1	0	0	1	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	c0006	762	1	0	0	1	0	0	copy fasta	CD151	chr11	827952	843831
CD160_chr1_145714499_145744288	1/1	c0001	546	340	70	70	150	14	34	copy fasta	CD160	chr1	145714499	145744288
CD163L1_chr12_7349960_7449153	0/1	c0001	4362	138	19	27	78	3	10	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0002	4362	67	0	19	41	2	5	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0003	4362	54	21	4	22	0	7	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0004	4362	21	4	4	2	6	5	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0005	4362	20	7	1	9	0	3	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0006	4362	11	4	0	5	0	2	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0007	4362	9	4	3	0	2	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0008	4362	7	6	1	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0009	4362	6	4	2	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0010	4368	5	0	0	5	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	1/0	c0011	4362	3	2	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0012	4362	3	3	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0013	4362	3	3	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0014	4362	3	3	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0015	4362	2	0	1	0	0	1	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0016	4362	2	0	0	2	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0017	4362	2	0	2	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0018	4362	2	1	1	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0019	4362	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0020	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0021	4362	1	0	0	0	0	1	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0022	4362	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0023	4362	1	0	0	0	0	1	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0024	4362	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153