JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD163L1_chr12_7349960_7449153	0/0	c0025	4362	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0026	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0027	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0028	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0029	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0030	4362	1	0	0	0	1	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0031	4362	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0032	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0033	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0034	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0035	4362	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0036	4362	1	0	0	0	0	1	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0037	4362	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0038	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0039	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0040	4362	1	0	1	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0041	4362	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0042	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0043	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	c0044	4362	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163_chr12_7465811_7508777	0/1	c0001	3366	116	3	26	67	5	14	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	1/0	c0002	3366	113	24	14	67	2	5	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0003	3366	111	41	10	52	1	7	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0004	3366	22	1	11	4	1	5	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0005	3366	18	0	0	18	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0006	3366	12	0	4	1	3	4	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0007	3366	7	6	1	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0008	3366	5	5	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0009	3366	5	1	3	0	0	1	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0010	3366	4	3	1	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0011	3366	3	0	0	3	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0012	3366	2	2	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0013	3366	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0014	3366	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0015	3366	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0016	3366	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0017	3366	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0018	3366	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0019	3366	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0020	3366	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0021	3366	1	0	1	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	c0022	3366	1	0	1	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD164L2_chr1_27374176_27388333	0/1	c0001	525	207	33	55	75	9	34	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	c0002	525	127	49	7	60	1	10	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	1/0	c0003	525	13	11	1	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	c0004	525	1	0	0	0	0	1	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	c0005	525	1	0	0	1	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	c0006	525	1	0	0	1	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	c0007	525	1	1	0	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	c0008	525	1	0	0	0	0	1	copy fasta	CD164L2	chr1	27374176	27388333