JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD164L2_chr1_27374176_27388333	0/0	c0009	525	1	0	0	1	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	c0010	525	1	0	1	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164_chr6_109361514_109387467	1/1	c0001	594	433	87	78	206	16	44	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	c0002	594	7	7	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	c0003	594	3	0	0	3	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	c0004	594	2	2	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	c0005	594	1	0	0	0	0	1	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	c0006	594	1	0	0	0	0	1	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	c0007	594	1	0	0	1	0	0	copy fasta	CD164	chr6	109361514	109387467
CD177_chr19_43348686_43368172	0/0	c0001	1314	110	1	5	94	1	9	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0002	1314	108	15	27	58	2	6	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0003	1314	70	28	12	24	3	3	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0004	1314	56	1	24	18	5	8	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/1	c0005	1314	26	7	1	6	2	9	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0006	1314	26	14	3	3	0	6	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0007	1314	7	7	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0008	1314	5	0	0	4	1	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0009	1314	4	0	0	4	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0010	1314	4	4	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0011	1314	3	3	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0012	1314	3	1	1	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0013	1314	3	0	1	0	0	2	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0014	1314	2	0	0	2	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0015	1314	2	0	2	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0016	1314	2	0	1	0	1	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0017	1314	2	0	2	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0018	1314	2	1	1	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0019	1314	2	0	1	0	1	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0020	1314	2	0	2	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0021	1314	2	1	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0022	1314	2	2	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0023	1314	2	0	0	2	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0024	1314	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0025	1314	1	0	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0026	1314	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0027	1314	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0028	1314	1	0	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0029	1314	1	0	0	0	1	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0030	1314	1	0	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0031	1314	1	0	1	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0032	1314	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0033	1314	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0034	1314	1	0	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0035	1314	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0036	1314	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0037	1314	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0038	1314	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0039	1314	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0040	1314	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0041	1314	1	0	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172